View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4299_low_2 (Length: 722)

Name: NF4299_low_2
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4299_low_2
NF4299_low_2
[»] chr4 (6 HSPs)
chr4 (267-710)||(17284971-17285400)
chr4 (19-419)||(17279558-17279956)
chr4 (364-710)||(17281978-17282327)
chr4 (166-233)||(17284907-17284974)
chr4 (528-571)||(13712182-13712225)
chr4 (482-519)||(3329790-3329827)
[»] chr1 (2 HSPs)
chr1 (528-622)||(22219294-22219388)
chr1 (482-514)||(23696526-23696558)
[»] chr6 (2 HSPs)
chr6 (528-620)||(31131029-31131121)
chr6 (476-514)||(31130995-31131033)
[»] chr5 (3 HSPs)
chr5 (489-519)||(19209626-19209656)
chr5 (477-514)||(19079028-19079065)
chr5 (477-514)||(19079272-19079309)
[»] chr2 (1 HSPs)
chr2 (490-531)||(18745851-18745892)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 267 - 710
Target Start/End: Original strand, 17284971 - 17285400
Alignment:
Q  267 caagcagatcattctatttttggtgaatggtcagaaggtaaacttggctgctacattttccatcatctttgtgaggctattagagaaactaagaaaaatc 366  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17284971 caagcagatcattctatttctggtgaatggtcagaaggtaaacttggctgctacatattccatcatctttgtgaggctattagagaaactaagaaaaatc 17285070  T
Q  367 agaagaagaatgtaccctatgcaagattactatctgagatgttccatcagagtagactcaatgacactcggaaggaatatagtgcattctcataacttga 466  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  17285071 agaagaagaatgtaccctatgcaagattactatatgagatgttccatcagagtagactcaatgacactcggaaggaatatggtgcattctcataacttga 17285170  T
Q  467 tgtggattacaaatataacactcatactaaatttatctagaatatttaacatatgcattatatttgatatcagagcaggtcgattcagaccgtgcattgg 566  Q
    |||||||||||||||||||||||||  |||||||||||||||||| || ||| ||  |||||||||||||| |||||| ||||||||||| | | |||||    
T  17285171 tgtggattacaaatataacactcat--taaatttatctagaatatatagcatgtgtgttatatttgatatcggagcagatcgattcagacggagtattgg 17285268  T
Q  567 gtcataataactcaataaatgtagtaggatcattgagttccaaatatttattctaaccgtcatatactagaacttgaatgtatatttactataagatagg 666  Q
    ||||| ||||||||||||||||||||         ||| ||      ||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  17285269 gtcattataactcaataaatgtagta--------aagtgcc-----cttattctaatcgtcatatactagaacttgaatgtatatttaatataagatagg 17285355  T
Q  667 agatgggtat-cttcaagctatattttaagggagaagagtataat 710  Q
    ||||||||||  ||||| |||||||||||||||| ||||||||||    
T  17285356 agatgggtataattcaaactatattttaagggaggagagtataat 17285400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 419
Target Start/End: Original strand, 17279558 - 17279956
Alignment:
Q  19 aatcaatgtcacaataacccaatcacacatttcctagctcataggttgtgataaccaaggaacgtttgaggttaacacctcaaaaacacaagcaagcaca 118  Q
    ||||||||||||||||||||||||| ||||| || | ||||||||||| ||||| ||||||| ||| |||||||| |||||||| |||  |||||| |||    
T  17279558 aatcaatgtcacaataacccaatcatacattgcccaactcataggttgggataaacaaggaatgttcgaggttaagacctcaaagaca--agcaagtaca 17279655  T
Q  119 ctgaggaaatcaaggagaagttgttccagatatgatcagactatgacaaagtcaagatcatgcacattgattacatgattctgttcagagtcattattga 218  Q
    |||||||||||||||||||||||||  |||||  |||||||||||||||| |||||| |||||||| | ||||||| ||| |||||||| |||||||| |    
T  17279656 ctgaggaaatcaaggagaagttgttatagataccatcagactatgacaaaatcaagaacatgcacaataattacattattttgttcagaatcattattca 17279755  T
Q  219 ttgcctaatcccaagggaatgaagcattgatcagatttcctgggatcacaagcagatcattctatttttggtgaatggtcagaaggtaaacttggctgct 318  Q
     |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||    
T  17279756 ctgcctaatcccaagggaaggaagcattgatcagatttcctgggatcacaagcagattattctatttctggtgaatgatcagaaggtaaacttggctgct 17279855  T
Q  319 acattttccatcatctttgtgaggctattagagaaactaagaaaaatcagaagaagaatgtaccctatgcaagattactatctgagatgttccatcagag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17279856 acattttccatcatctttgtgaggctattagagaaactaagaaaaatcagaagaagaatgtaccctatgcaagattactatctgagatgttccatcagag 17279955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 364 - 710
Target Start/End: Original strand, 17281978 - 17282327
Alignment:
Q  364 atcagaagaagaatgtaccctatgcaagattactatctgagatgttccatcagagtagactcaatgacactcggaaggaatatagtgcattctcataact 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  17281978 atcagaagaagaatgtaccctatgcaagattactatctgagatgttccatcagagtagactcaatgacactcggaaggaatatggtgcattctcagaact 17282077  T
Q  464 tgat--gtggattacaaatataacactcatactaaatttatctagaatatttaacatatgcattatatttgatatcagagcaggtcgattcagaccgtgc 561  Q
    ||||  |||||||||||||||   ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||    
T  17282078 tgatatgtggattacaaatatgtgactcatactaaatttatctagaatatttaacatgtgcgttatatttgatatcagagcaggtctattcagaccgtgc 17282177  T
Q  562 attgggtcataataactcaataaatgtagtaggatcattgagttccaaatatttattctaaccgtcatatactagaacttgaatgtatatttactataag 661  Q
    ||||||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17282178 attgggtaattataactcaataaatgtagtaggatcattgagttccagatatttattctaaccgtcatatactagaacttgaatgtatatttaatataag 17282277  T
Q  662 ataggagatgggtat-cttcaagctatattttaagggagaagagtataat 710  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  17282278 ataggagatgggtataattcaagctatattttaagggaggagagtataat 17282327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 17284907 - 17284974
Alignment:
Q  166 aaagtcaagatcatgcacattgattacatgattctgttcagagtcattattgattgcctaatcccaag 233  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  17284907 aaagtcaagaacatgcacattgattacatgattctgttcagaatcattattgactgcctaatcccaag 17284974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 528 - 571
Target Start/End: Complemental strand, 13712225 - 13712182
Alignment:
Q  528 atttgatatcagagcaggtcgattcagaccgtgcattgggtcat 571  Q
    ||||| |||||||||||||||||||||| ||||| |||||||||    
T  13712225 atttggtatcagagcaggtcgattcagatcgtgccttgggtcat 13712182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 519
Target Start/End: Complemental strand, 3329827 - 3329790
Alignment:
Q  482 taacactcatactaaatttatctagaatatttaacata 519  Q
    |||| |||||||||||||||||||||||||||| ||||    
T  3329827 taacgctcatactaaatttatctagaatatttatcata 3329790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 528 - 622
Target Start/End: Complemental strand, 22219388 - 22219294
Alignment:
Q  528 atttgatatcagagcaggtcgattcagaccgtgcattgggtcataataactcaat-aaatgtagtaggatcattgagttccaaatatttattctaa 622  Q
    ||||| |||||||||||||||||||||| |||||  |||||||| | || ||||| ||||| ||| ||| |||||||||||  |||||||||||||    
T  22219388 atttggtatcagagcaggtcgattcagatcgtgc-ctgggtcattagaattcaataaaatgcagtgggaccattgagttccggatatttattctaa 22219294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 514
Target Start/End: Complemental strand, 23696558 - 23696526
Alignment:
Q  482 taacactcatactaaatttatctagaatattta 514  Q
    |||||||||||||||||||||||||||||||||    
T  23696558 taacactcatactaaatttatctagaatattta 23696526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 620
Target Start/End: Original strand, 31131029 - 31131121
Alignment:
Q  528 atttgatatcagagcaggtcgattcagaccgtgcattgggtcataataactcaataaatgtagtaggatcattgagttccaaatatttattct 620  Q
    ||||| |||||||||||||||||||||| ||||| ||| || || | || ||||| || ||||| ||| ||||| ||| || |||||||||||    
T  31131029 atttggtatcagagcaggtcgattcagatcgtgccttgagtaattagaattcaatgaacgtagtgggaccattgggtttcagatatttattct 31131121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 476 - 514
Target Start/End: Complemental strand, 31131033 - 31130995
Alignment:
Q  476 caaatataacactcatactaaatttatctagaatattta 514  Q
    ||||| |||||| ||||||||||||||||||||||||||    
T  31131033 caaatgtaacacacatactaaatttatctagaatattta 31130995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 489 - 519
Target Start/End: Original strand, 19209626 - 19209656
Alignment:
Q  489 catactaaatttatctagaatatttaacata 519  Q
    |||||||||||||||||||||||||||||||    
T  19209626 catactaaatttatctagaatatttaacata 19209656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 514
Target Start/End: Complemental strand, 19079065 - 19079028
Alignment:
Q  477 aaatataacactcatactaaatttatctagaatattta 514  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  19079065 aaatgtaacacccatactaaatttatctagaatattta 19079028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 514
Target Start/End: Complemental strand, 19079309 - 19079272
Alignment:
Q  477 aaatataacactcatactaaatttatctagaatattta 514  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  19079309 aaatgtaacacccatactaaatttatctagaatattta 19079272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 490 - 531
Target Start/End: Complemental strand, 18745892 - 18745851
Alignment:
Q  490 atactaaatttatctagaatatttaacatatgcattatattt 531  Q
    ||||||||||||||||||||||||| ||| || |||||||||    
T  18745892 atactaaatttatctagaatatttatcatgtgtattatattt 18745851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University