View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_21 (Length: 355)
Name: NF4299_low_21
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 82 - 343
Target Start/End: Original strand, 6115671 - 6115933
Alignment:
| Q |
82 |
gattgcgatcatggttgtatgaaccttgatgattctgtgtgggatctcatgaattgtttgatgatgcatcagatttggatatggagtggcaaaggaggca |
181 |
Q |
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| T |
6115671 |
gattgcgatcatggttgtatgaaccttgatgattctgtgtgggatctcatgaattgtttgatgatgcatcagatttggatatggagtggcaaaggaggca |
6115770 |
T |
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| Q |
182 |
tgatcaattctatagagtaatttataatagtcttcctaagaaagaagcttaaaaataaattagatttgattctggtaaaataaaaattgtttcaaaata- |
280 |
Q |
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| T |
6115771 |
tgatcaattctatagagtaatttataatagtcttcctaagaaagaagcttaaaaataaattagatttgattttggtaaaataaaaattgtttcaaaatac |
6115870 |
T |
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| Q |
281 |
cccctaagtcatctgacattgcatttttgctgatgtggtacactgagttgccttttactgatg |
343 |
Q |
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| T |
6115871 |
cccctaagtcatctgacattgcatttttgctgacgtgtcacactgagtcgccttttactgatg |
6115933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 82 - 264
Target Start/End: Original strand, 6122259 - 6122441
Alignment:
| Q |
82 |
gattgcgatcatggttgtatgaaccttgatgattctgtgtgggatctcatgaattgtttgatgatgcatcagatttggatatggagtggcaaaggaggca |
181 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6122259 |
gattacgatcatggttgtatgaaccttgatgattctgtgtgggatctcatgaagtgtttgatgatgcatcagatttggatatggagtggcaaaggaggca |
6122358 |
T |
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| Q |
182 |
tgatcaattctatagagtaatttataatagtcttcctaagaaagaagcttaaaaataaattagatttgattctggtaaaataa |
264 |
Q |
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| T |
6122359 |
tgatcaattctatagagtaatttataatagttttcctaagaaagaagcttaaaaataaattagatttggttctcgtaaaataa |
6122441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 6225315 - 6225249
Alignment:
| Q |
281 |
cccctaagtcatctgacattgcatttttgctgatgtggtacactgagttgccttttactgatgatgt |
347 |
Q |
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|||||||| || ||||| || |||||||||||||||| || ||||||| |||||| |||||||||| |
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| T |
6225315 |
cccctaagccagctgactgtgtatttttgctgatgtggcacgctgagttacctttttctgatgatgt |
6225249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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