View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_22 (Length: 352)
Name: NF4299_low_22
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 335
Target Start/End: Original strand, 54586049 - 54586370
Alignment:
| Q |
15 |
cagagacaggagtaaaggtaaaactactggttgtgtttttgaagaaacaaactgagttaaaggacacacaaggttgtggtttggactaaaacaaaagatg |
114 |
Q |
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| T |
54586049 |
cagaaacaggagtaaaggtaaaactactggttgtgtttttgaagaaacaaactgagttaaaggacacacaaggttgtggtttgaactaaaacaaaagatg |
54586148 |
T |
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| Q |
115 |
tctttatctag-actcaaagattgtggaaaagttgtgatgcttttttaacttgtgtggcgtggaagcactttttgtcatggaaataaaaactgatttttc |
213 |
Q |
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| T |
54586149 |
tctttatctaggactcaaagattgtggaaaagttgtgatgcttttttaacttgtgtggcgtggaagcactttttgtcatggaaataaaaactgatttttc |
54586248 |
T |
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| Q |
214 |
aggagaactttactttacccccttcaaatgagttatagtacatggagtgcaatacgtgtaattattagtgttttcttattctattacccttccaattatt |
313 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
54586249 |
aggataactttactttacccccttcaaatgagttatagtacatggagtgcaatacgtgtaattattagtgttttcttattctattacccttacaattatt |
54586348 |
T |
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| Q |
314 |
acgagaggttaaaataaaatgt |
335 |
Q |
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|||||||||||||||||||||| |
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| T |
54586349 |
acgagaggttaaaataaaatgt |
54586370 |
T |
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