View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_23 (Length: 346)
Name: NF4299_low_23
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 52605124 - 52605439
Alignment:
| Q |
15 |
aatacctagaaatttttgagtcaaatagggaatattggtggcaaagaaaataaggagatgaaaaagaaggaggtagaggaagcaaaaggaattgatttat |
114 |
Q |
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| T |
52605124 |
aatacctagaaatttttgagtcaaatagggaatattggtggcaaagaaaataaggagatgaacaagaaggaggtagaggaagcaaaaggaattgatttat |
52605223 |
T |
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| Q |
115 |
attgttagtgagggaaagagagagtgttataagaatgggacattaactatggtacctcggatatatgcagtaaaagactttgaatttgatacatcacatc |
214 |
Q |
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| T |
52605224 |
attgttagtgagggaaagagagagtgttataagaatgggacattaactatggtacctcggatatatgcagtaaaagactttgaatttgatacatcacatc |
52605323 |
T |
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| Q |
215 |
tctttggtcagaaatttcaccaaacctcattaattcacttcaattctatggtgacaaaataatagcaatagtaatagtaatactattattttaaccaaat |
314 |
Q |
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| T |
52605324 |
tctttggtcagaaatttcaccaaacctcattaattcacttcaattctatggtgacaaaataatagcaatagtaatagtaatactattattttaaccaaat |
52605423 |
T |
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| Q |
315 |
ggaattttgaacataa |
330 |
Q |
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| T |
52605424 |
ggaattttgaacataa |
52605439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 260
Target Start/End: Original strand, 16906179 - 16906283
Alignment:
| Q |
147 |
gaatgggacattaactatggtacctcggatatatgcagtaaaagactttgaatttgatacatcacatctctttggtcagaaatttcaccaaacctcatta |
246 |
Q |
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| T |
16906179 |
gaataggacattaactatggtacctcggatat--gcagttaaaga----gaccttgatacatcacaa---tttggtcagaaattgtaccaaacctcatta |
16906269 |
T |
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| Q |
247 |
attcacttcaattc |
260 |
Q |
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| T |
16906270 |
attgacttcaattc |
16906283 |
T |
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