View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_24 (Length: 338)
Name: NF4299_low_24
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 182 - 329
Target Start/End: Complemental strand, 26306216 - 26306069
Alignment:
| Q |
182 |
attacagcaaagataacaacaaaacaagttcatcaaaaacaagcatggaaacaaaaggtggagaagttagaaggcttcacataatctacttccttagtca |
281 |
Q |
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| T |
26306216 |
attacagcaaagataacaacaaaacaagttcatcaaaaacaagcatggaaacaaaaggtggagaagttagaaggcttcacataatctacttccttagtca |
26306117 |
T |
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| Q |
282 |
catgggtggtcatgcagaacatcctcatctcattcgtgttcttcatct |
329 |
Q |
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| T |
26306116 |
catgggtggtcatgcagaacatcctcatctcattcgtgttcttcatct |
26306069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 247 - 329
Target Start/End: Complemental strand, 781550 - 781468
Alignment:
| Q |
247 |
gttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattcgtgttcttcatct |
329 |
Q |
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| T |
781550 |
gttagaatgcttcatataatgtacttccttagtcacatgcgtggtcattcagaacagcctcatctctttcgtgttcttcatct |
781468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 217 - 325
Target Start/End: Complemental strand, 46209455 - 46209350
Alignment:
| Q |
217 |
aaaacaagcatggaaacaaaaggtggagaagttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattc |
316 |
Q |
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| T |
46209455 |
aaaacaagcatggaagcaaagtgtg---aagttagaaggcttcacataatctgcttatttagctacatgggtggttttgcagaacattatcgtctcatta |
46209359 |
T |
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| Q |
317 |
gtgttcttc |
325 |
Q |
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| T |
46209358 |
gtgttcttc |
46209350 |
T |
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