View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_28 (Length: 302)
Name: NF4299_low_28
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 78 - 302
Target Start/End: Original strand, 34348058 - 34348283
Alignment:
| Q |
78 |
ataataaattaagcggtttacgatgttaaataattatttccaacatgctatttgtgtttacaatgttaa-tgttaaatactcaaggtttcgaaatagtca |
176 |
Q |
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| T |
34348058 |
ataataaattaagcggtttacgatgttaaataattatttccaacatgctatttgtgtttacaatgttaaatgttaaatactcaaggtttcgaaataatca |
34348157 |
T |
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| Q |
177 |
cgtggtctcctagctataggataaaatccgtatatacttttgaacaagtaaaagtatacaactattttatgatggtatcaattttttcctatagatcata |
276 |
Q |
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|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34348158 |
cgtggtctcctacctataggataaaatccgtttatacttttgaacaagtaaaagtatacaactattttatgatggtatcaattttttcctatagatcata |
34348257 |
T |
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| Q |
277 |
tatagcatacatttcatttagttttt |
302 |
Q |
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|||||||||||||||||||||||||| |
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| T |
34348258 |
tatagcatacatttcatttagttttt |
34348283 |
T |
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