View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_3 (Length: 675)
Name: NF4299_low_3
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_3 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 531; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 531; E-Value: 0
Query Start/End: Original strand, 1 - 627
Target Start/End: Complemental strand, 27079 - 26439
Alignment:
| Q |
1 |
tttggaagaaataattttaacttattttatgacaaacaatacaaacgttaaagttgtttagtgtctagaaacaatggaatggatcctcagttttttctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27079 |
tttggaagaaataattttaacttattttatgacaaacaatacaaacgttaaagttgtttagtgtctagaaacaatggaatggatcctcagttttttctct |
26980 |
T |
|
| Q |
101 |
caaccaaatgttctccannnnnnnnnncgaattccaaaatcacccactctttttatttcaataacctagatctttcataaattccaaaatcaaatcaccc |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26979 |
aaaccaaatgttctccattttttttttcgaattccaaaatcacccactctttttatttcaataacctagatctttcataaattccaaaatcaaatcaccc |
26880 |
T |
|
| Q |
201 |
actctttctatttcaatagcctagatctttcatattttttcctcatatgagatgctccttatcttgta--------------tttccaaatagacgataa |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
26879 |
actctttctatttcaatagcctagatctttcatattttttcctcatatgagatgctccttatcttgtagcaatagacatgtatttgcaaatagacgataa |
26780 |
T |
|
| Q |
287 |
acgaattgtttaactttgtttagcttgggaataaaaatatttcatttactacaaggtataaggcacaccactcaagttgtgtgtagtaagtaccttttgg |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26779 |
acgaattgtttaactttgtttagcttgggaataaaaatatttcatttgctacaaggtataaggcacaccactcaagttgtgtgtagtaagtaccttttgg |
26680 |
T |
|
| Q |
387 |
gcggtgggaaatctgcactatgaccaacacaatctaacactagaacagcaaataatgtaacaagnnnnnnntctgaaaacaatgtcctattctcaacttc |
486 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
26679 |
gcggtgggaaatctgcactatgaccaacacaatctaacactagaacagcaaataatgtaacaagaaaaaaatctgaaaacaatgtcctattctcaacttc |
26580 |
T |
|
| Q |
487 |
ctctgtcctcttcccttatgaaaccctttctccaacttctccctctctctcaaatcaaaatactcgttatcaatgacttcaccaacaataacctctctag |
586 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26579 |
ctctgtcctcttcccttatgaaaccctttctccaacttctccctctctctcaaatcaaaatactcgttatcaatgacttcaccaacaataacctctctag |
26480 |
T |
|
| Q |
587 |
ctcgctcccacccacctacaattatgctaaatcaactgaat |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
26479 |
ctcgctcccacccacctacaattatgctaaatcaactgaat |
26439 |
T |
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