View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_31 (Length: 284)
Name: NF4299_low_31
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_31 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 74 - 284
Target Start/End: Original strand, 26651614 - 26651824
Alignment:
| Q |
74 |
gaacctcctaagaggccaaaatccactttcaccgaatgaactaaaaaccaaagaccaaagaccaaaatccactacccatactttccatattttaagttgt |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26651614 |
gaacctcctaagaggccaaaatccactttcaccgaatgaactaaaaaccaaagaccaaagaccaaaatccactacccatactttccatattttaagttat |
26651713 |
T |
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| Q |
174 |
tacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaaccttagcacatatttgacattgaacgaaactgat |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
26651714 |
tacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaaccttggcacatatttgacattgaacgaaactggt |
26651813 |
T |
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| Q |
274 |
ttgcaactctt |
284 |
Q |
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| T |
26651814 |
tagcaactctt |
26651824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 74 - 284
Target Start/End: Original strand, 26757582 - 26757792
Alignment:
| Q |
74 |
gaacctcctaagaggccaaaatccactttcaccgaatgaactaaaaaccaaagaccaaagaccaaaatccactacccatactttccatattttaagttgt |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
26757582 |
gaacctcctaagaggccaaaatccactttcaccgaatgaactaaaaaccaaagaccaaagaccaaaatccactacccatactttccatattttaagttat |
26757681 |
T |
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| Q |
174 |
tacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaaccttagcacatatttgacattgaacgaaactgat |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
26757682 |
tacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaaccttggcacatatttgacattgaacgaaactggt |
26757781 |
T |
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| Q |
274 |
ttgcaactctt |
284 |
Q |
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| T |
26757782 |
tagcaactctt |
26757792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 145 - 257
Target Start/End: Complemental strand, 27421882 - 27421770
Alignment:
| Q |
145 |
ctacccatactttccatattttaagttgttacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaacctta |
244 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| | ||| | |||||||| |||||||||||||||||||||| |
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| T |
27421882 |
ctacccatactttccatattctaagtaattacaatatataatcacagaaattattagaagatataattgaatattcatatgatcaacttcaaaaacctta |
27421783 |
T |
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| Q |
245 |
gcacatatttgac |
257 |
Q |
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| T |
27421782 |
gcacatatttgac |
27421770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 145 - 257
Target Start/End: Original strand, 65481 - 65593
Alignment:
| Q |
145 |
ctacccatactttccatattttaagttgttacaatatataatcacagaaaatattagaagctgtaaattaatattcagatgatcaacttcaaaaacctta |
244 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||| | ||| | |||||||| |||||||||||||||||||||| |
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| T |
65481 |
ctacccatactttccatattctaagtaattacaatatataatcacagaaattattagaagatataattgaatattcatatgatcaacttcaaaaacctta |
65580 |
T |
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| Q |
245 |
gcacatatttgac |
257 |
Q |
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||||||||||||| |
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| T |
65581 |
gcacatatttgac |
65593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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