View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_32 (Length: 278)
Name: NF4299_low_32
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 263
Target Start/End: Complemental strand, 14195252 - 14194998
Alignment:
| Q |
13 |
atacttcaacatatcaaatgtgtctacggccttttattatttgcactt---taatattttaattgtatataataatggaacaaatgaaatgaataacaaa |
109 |
Q |
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| T |
14195252 |
atactttaacatatcaaatgtgtctacggccttttattatttgcacttctttagtattttaattgtatataataatggaacaaatgaaatgaataacaaa |
14195153 |
T |
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| Q |
110 |
gttataattaatccttttt-cattcactttccaagaattaaaatgagaattttgttctatcccgtcataaaatactaaaataatgaatgaaagttctatt |
208 |
Q |
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| T |
14195152 |
gttataattaatcattttttcattcactttccaagaattaaaatgaaaattttgttctatcccgtcataaaatactaaaataatgaatgaaaattctatt |
14195053 |
T |
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| Q |
209 |
ccattcactacaagaaaatgaggtaatacatacacacggaatccagtgaggattc |
263 |
Q |
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| T |
14195052 |
ccattcactacaagaaaataaggtaatacatacacacggaatatagtgaggattc |
14194998 |
T |
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