View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4299_low_33 (Length: 251)
Name: NF4299_low_33
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_33 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 24553311 - 24553189
Alignment:
| Q |
116 |
ctatttaaggaataaaactaacaacaatgacttacaggtggggtgaatccaggtaaaacttgtgaatgtgcaagcacaaaatcaccaaccgaaatagggc |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24553311 |
ctattcaaggaataaaactaacaacaatgacttacaggtggggtgaatccaggtaaaacttgtgaatgtgcaagcacaaaatcaccaaccgaaatagggc |
24553212 |
T |
|
| Q |
216 |
aagatgattctacacaaaggtct |
238 |
Q |
| |
|
||||||||||| ||||||||||| |
|
|
| T |
24553211 |
aagatgattctccacaaaggtct |
24553189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 24563379 - 24563258
Alignment:
| Q |
116 |
ctatttaaggaataaaactaacaacaatgacttacaggtggggtgaatccaggtaaaacttgtgaatgtgcaagcacaaaatcaccaaccgaaatagggc |
215 |
Q |
| |
|
||||| ||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
24563379 |
ctattcaaggaataaaattaacagcaatgacttacaggtggggtgtatgcaggtaaaacttgtgaatgagcaatcacaaaatcaccaaccgaaatagggc |
24563280 |
T |
|
| Q |
216 |
aagatgattctacacaaaggtc |
237 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
24563279 |
aagatgattctccacaaaggtc |
24563258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 113
Target Start/End: Complemental strand, 24563527 - 24563480
Alignment:
| Q |
66 |
tatctaaatgtcataacacaaagtataagttgaaaggatttcttctca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24563527 |
tatctaaatgtcataacacaaagtataagtaataaggatttcttctca |
24563480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 24553459 - 24553431
Alignment:
| Q |
66 |
tatctaaatgtcataacacaaagtataag |
94 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
24553459 |
tatctaaatgtcataacacaaagtataag |
24553431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University