View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4299_low_34 (Length: 249)

Name: NF4299_low_34
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4299_low_34
NF4299_low_34
[»] chr4 (2 HSPs)
chr4 (1-249)||(45039242-45039490)
chr4 (112-186)||(25750462-25750536)
[»] chr1 (11 HSPs)
chr1 (106-195)||(34405768-34405857)
chr1 (106-186)||(34408904-34408984)
chr1 (112-186)||(2711831-2711905)
chr1 (113-186)||(17983387-17983460)
chr1 (112-186)||(2271866-2271940)
chr1 (112-186)||(31565463-31565537)
chr1 (112-186)||(2273269-2273343)
chr1 (112-186)||(5344202-5344276)
chr1 (112-165)||(34410353-34410406)
chr1 (111-167)||(25493207-25493263)
chr1 (113-186)||(42054556-42054629)
[»] chr3 (1 HSPs)
chr3 (112-194)||(43559542-43559624)
[»] chr5 (6 HSPs)
chr5 (106-186)||(5513410-5513490)
chr5 (112-188)||(8880871-8880947)
chr5 (112-186)||(32685128-32685202)
chr5 (112-186)||(13300042-13300116)
chr5 (112-186)||(13301738-13301812)
chr5 (132-186)||(39413583-39413637)
[»] scaffold0471 (1 HSPs)
scaffold0471 (112-199)||(1282-1369)
[»] chr8 (2 HSPs)
chr8 (112-199)||(36111409-36111496)
chr8 (107-168)||(10436523-10436584)
[»] chr7 (2 HSPs)
chr7 (107-186)||(45940023-45940102)
chr7 (113-186)||(41294149-41294222)
[»] chr2 (3 HSPs)
chr2 (112-195)||(27282521-27282604)
chr2 (112-186)||(5245913-5245987)
chr2 (113-186)||(43311961-43312034)
[»] chr6 (1 HSPs)
chr6 (106-186)||(5635430-5635510)


Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 45039242 - 45039490
Alignment:
Q  1 aatatcgctgtctcctgcaaagctaatatacgaaaaataacgttgtgcttagttggttgtagcgagatataaatatgtattaaatacatatatgttagca 100  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  45039242 aatatcgctgtcacctgcaaagctaatatgcgaaaaataacgttgtgcttagttggttgtagcgggatataaatatgtattaaatacatttatgttagca 45039341  T
Q  101 tgatcaacaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccagtattttttgtttc 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||    
T  45039342 tcatcaacaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccagtttgttttgtttc 45039441  T
Q  201 atttcgtattatgcgacaataaatgcaattcagttacttttttcttttc 249  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45039442 atttcgtattatgcgacaataaatgcaattcagttacttttttcttttc 45039490  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 25750462 - 25750536
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25750462 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 25750536  T

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Target: chr1 (Bit Score: 82; Significance: 8e-39; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 34405768 - 34405857
Alignment:
Q  106 aacaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccagtatttttt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  34405768 aacaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccattttttttt 34405857  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 34408904 - 34408984
Alignment:
Q  106 aacaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34408904 aacaagcggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 34408984  T

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Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 2711905 - 2711831
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2711905 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 2711831  T

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Target: chr1; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 17983460 - 17983387
Alignment:
Q  113 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17983460 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 17983387  T

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Target: chr1; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 2271866 - 2271940
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    ||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  2271866 tggcccattagctcagttggttagagcgttgtgctaataacgcaaaggtcgcaggttcgaaacctgcatgggcca 2271940  T

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Target: chr1; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 31565537 - 31565463
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  31565537 tggcccattagcttagttggttagagcgtcgtgctaataacgtgaaggtcgcaggttcgaaacctgcatgggcca 31565463  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 2273269 - 2273343
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||||||||||||||||||||||||| || ||||||||||||||||||||||||||| || ||||||||||||||    
T  2273269 tggcccattagctcagttggttagagtgttgtgctaataacgcgaaggtcgcaggtttgagacctgcatgggcca 2273343  T

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Target: chr1; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 5344202 - 5344276
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  5344202 tggcccattaacttagtgggttagagcgtcgtgctaataacgcgaaggttgcaggttcgagacctgcatgggcca 5344276  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 34410353 - 34410406
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcag 165  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34410353 tggcccattagctcagttggttagagtgtcgtgctaataacgcgaaggtcgcag 34410406  T

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Target: chr1; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 25493207 - 25493263
Alignment:
Q  111 gtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggt 167  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25493207 gtggcctattagctcagttggttagagcgtcgtgctaataacgcgaaggttgcaggt 25493263  T

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Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 42054556 - 42054629
Alignment:
Q  113 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||| ||||||||| |||||||||| || |||||||||| |  |||||||||||||||| ||||||||||||||    
T  42054556 ggcctattagctcaattggttagagtgtggtgctaataaggtcaaggtcgcaggttcgagacctgcatgggcca 42054629  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 43559542 - 43559624
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccagtattttt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  43559542 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccagtcttttt 43559624  T

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Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 5513490 - 5513410
Alignment:
Q  106 aacaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5513490 aacaagaggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 5513410  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 112 - 188
Target Start/End: Complemental strand, 8880947 - 8880871
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccagt 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8880947 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccagt 8880871  T

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Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 32685202 - 32685128
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32685202 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 32685128  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 13300116 - 13300042
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13300116 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgagacctgcatgggcca 13300042  T

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Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 112 - 186
Target Start/End: Complemental strand, 13301812 - 13301738
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13301812 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgagacctgcatgggcca 13301738  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 186
Target Start/End: Original strand, 39413583 - 39413637
Alignment:
Q  132 ttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||||||||||||||| |||||||||||||||||||| || |||| |||||||||    
T  39413583 ttagagcgtcgtgctattaacgcgaaggtcgcaggtttgagacctacatgggcca 39413637  T

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Target: scaffold0471 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 1282 - 1369
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccagtattttttgttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  1282 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccattttattttgttt 1369  T

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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 199
Target Start/End: Original strand, 36111409 - 36111496
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccagtattttttgttt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||    
T  36111409 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccattttattttgttt 36111496  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 10436523 - 10436584
Alignment:
Q  107 acaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggtt 168  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10436523 acaattggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggtt 10436584  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 107 - 186
Target Start/End: Complemental strand, 45940102 - 45940023
Alignment:
Q  107 acaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45940102 acaattggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 45940023  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 113 - 186
Target Start/End: Original strand, 41294149 - 41294222
Alignment:
Q  113 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41294149 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 41294222  T

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Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 27282521 - 27282604
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccagtatttttt 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  27282521 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggccaatttttttt 27282604  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 186
Target Start/End: Original strand, 5245913 - 5245987
Alignment:
Q  112 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5245913 tggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 5245987  T

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Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 113 - 186
Target Start/End: Complemental strand, 43312034 - 43311961
Alignment:
Q  113 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43312034 ggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 43311961  T

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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 186
Target Start/End: Complemental strand, 5635510 - 5635430
Alignment:
Q  106 aacaagtggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcgaaacctgcatgggcca 186  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5635510 aacaaatggcccattagctcagttggttagagcgtcgtgctaataacgcgaaggtcgcaggttcaaaacctgcatgggcca 5635430  T

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