View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4299_low_35 (Length: 249)

Name: NF4299_low_35
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4299_low_35
NF4299_low_35
[»] chr5 (6 HSPs)
chr5 (1-236)||(40181148-40181383)
chr5 (45-193)||(38605675-38605820)
chr5 (34-122)||(40180547-40180635)
chr5 (54-185)||(38604989-38605120)
chr5 (1-113)||(41885880-41885992)
chr5 (135-177)||(41885995-41886037)
[»] chr8 (5 HSPs)
chr8 (2-190)||(44459540-44459725)
chr8 (2-190)||(44467073-44467258)
chr8 (33-193)||(44460273-44460430)
chr8 (33-193)||(44467806-44467963)
chr8 (54-193)||(34502246-34502382)
[»] chr1 (1 HSPs)
chr1 (33-193)||(46359143-46359300)
[»] chr6 (1 HSPs)
chr6 (45-193)||(410919-411068)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 40181383 - 40181148
Alignment:
Q  1 aactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatac 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181383 aactcatagaatccttctcagttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatac 40181284  T
Q  101 ttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgctactccat 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||    
T  40181283 atattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaagcagagtctatctatcaaaagttgctgctactccat 40181184  T
Q  201 gatgatgatcaagaagaatacaaccaccttcttcct 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  40181183 gatgatgatcaagaagaatacaaccaccttcttcct 40181148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 45 - 193
Target Start/End: Complemental strand, 38605820 - 38605675
Alignment:
Q  45 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 144  Q
    |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| || ||||||| |||||| |||||||||||   || ||||| |||||    
T  38605820 gcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctctttt---gaccacaacgtgta 38605724  T
Q  145 gtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 193  Q
    |||||||||| ||||||||| |  ||||||||| |||||| ||||||||    
T  38605723 gtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 38605675  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 34 - 122
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  34 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagct 122  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||  || |||||||||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 185
Target Start/End: Complemental strand, 38605120 - 38604989
Alignment:
Q  54 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 153  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| | |||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  38605120 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 38605021  T
Q  154 tgatccaccaaacagcttctatctatcaaaag 185  Q
    || |||| ||| | |||||||||| |||||||    
T  38605020 tgctccagcaagccgcttctatctgtcaaaag 38604989  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 41885880 - 41885992
Alignment:
Q  1 aactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatac 100  Q
    |||| ||||||| ||||||  |||||||||   |||| || || ||||  |||||||||||||| ||||| |  |||||||||| |||||||||||||||    
T  41885880 aactaatagaattcttctcaattatggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttttcaatgtgagccaaatcaagatac 41885979  T
Q  101 ttattactataca 113  Q
     ||||||| ||||    
T  41885980 atattactttaca 41885992  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 41885995 - 41886037
Alignment:
Q  135 acaaggtgtagtgctgatatgatccaccaaacagcttctatct 177  Q
    |||||| |||||| |||||||||||||||||| ||||||||||    
T  41885995 acaaggagtagtgatgatatgatccaccaaactgcttctatct 41886037  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 44459540 - 44459725
Alignment:
Q  2 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 101  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44459540 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44459639  T
Q  102 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 190  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44459640 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44459725  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 190
Target Start/End: Original strand, 44467073 - 44467258
Alignment:
Q  2 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 101  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44467073 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44467172  T
Q  102 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 190  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44467173 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44467258  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 44460273 - 44460430
Alignment:
Q  33 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 132  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  44460273 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 44460370  T
Q  133 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 193  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44460371 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44460430  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 44467806 - 44467963
Alignment:
Q  33 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 132  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  44467806 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 44467903  T
Q  133 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 193  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44467904 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44467963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 193
Target Start/End: Complemental strand, 34502382 - 34502246
Alignment:
Q  54 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 153  Q
    ||||||||||| ||||| | ||||||||||||||| |||| |||||| ||   || ||||||| ||||||||||   || |||||| ||||   ||||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctctttt---gatcacaagatgtatcactgata 34502286  T
Q  154 tgatccaccaaacagcttctatctatcaaaagttgctgct 193  Q
    ||| ||||||| | |||||||||| ||||||| |||||||    
T  34502285 tgacccaccaagccgcttctatctgtcaaaagatgctgct 34502246  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 193
Target Start/End: Original strand, 46359143 - 46359300
Alignment:
Q  33 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 132  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  46359143 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 46359240  T
Q  133 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 193  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  46359241 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 46359300  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 193
Target Start/End: Original strand, 410919 - 411068
Alignment:
Q  45 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 144  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||   || |||| || |||||||||| || |  ||||| || |    
T  410919 gcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacatacatctttacattggaagctctttttagaacaacaagttgca 411018  T
Q  145 gtgc-tgatatgatccaccaaacagcttctatctatcaaaagttgctgct 193  Q
    || | | ||||| |||| ||| | |||||||||| ||||||| |||||||    
T  411019 gtactttatatgctccagcaagcggcttctatctgtcaaaagatgctgct 411068  T

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