View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_4 (Length: 631)
Name: NF4299_low_4
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 8 - 616
Target Start/End: Original strand, 33967771 - 33968400
Alignment:
| Q |
8 |
atcattaatttttgctccattcattcaatttacttacaaaattttgtatgcaattctgatttaatttctaaattgcacatgtcagggcaaagtaatatcg |
107 |
Q |
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| T |
33967771 |
atcattaatttttgctccattcattcaatttacttacaaaattttgtatgcaattctgatttaatttctaaattgcacatgtcagggcaaagtaatatcg |
33967870 |
T |
|
| Q |
108 |
attcagagatcttattgtcaacagcccttgatttcggccggtaatgttatttagatattgcattttttcaatcctaatcacggcagaacttaattaatat |
207 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
33967871 |
attcagagatcttactgtcaacagcccttgatttcggccggtaatgttatttagatattgcattttttcaatcctaaacacggcagaacttaattaattt |
33967970 |
T |
|
| Q |
208 |
aacaaatctctttatctcttgatagtttgcaagtgatagcgcatatgttttcttttaaaatgcttcacagaatccttgttcaacctcaaaggtagtccaa |
307 |
Q |
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| T |
33967971 |
agcaaatctctttatctgttgatagtttgcaagtgatagcgcatatgttttcttttaaaatgcttcacagaatcctttttcaacctcaaaggtattccaa |
33968070 |
T |
|
| Q |
308 |
aaaatgttcttggaagcgaggagaaaaaagtttgagaagcgtgatttaacatttaatattataaaaacg--------------------gaatatatcta |
387 |
Q |
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| T |
33968071 |
aaaatgttcttggaagcgaggagaaaaaagtttgagaagcgtggtttaacttttaatattataaaaacggaatatatctcccaaatcaagaatatatcta |
33968170 |
T |
|
| Q |
388 |
actccctaatgcttgatcacgtttgaatcgtaaccaagggtaacatcgctttcaaaaaagatgacatgagttgatatatgaagctagtcaagctaccctt |
487 |
Q |
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|||| |||||||||||||||| ||||||||| ||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
33968171 |
actctctaatgcttgatcacgattgaatcgtgaccaaggataacatcgctgtcaaaaaagatgacatgagttgatatctgaagctagtcgagctaccctt |
33968270 |
T |
|
| Q |
488 |
catgaagaagggaataaacccaaataacttgtgttaat--nnnnnnnnngttagtcttaaaactagaaacattcatatactcacatttttttaatttgtt |
585 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33968271 |
catgaagaagggaataaacccaaataacttgtgttaataaaaaaaaaaagttaatcttaaaactagaaaca-tcatatactcacatttttttaatttgtt |
33968369 |
T |
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| Q |
586 |
gtggtatatgtatggcaggtgatgtgattaa |
616 |
Q |
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| T |
33968370 |
gtggtatatgtatggcaggtgatgtgattaa |
33968400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 33431832 - 33431749
Alignment:
| Q |
8 |
atcattaatttttgctccattcattcaatttacttacaaaattttgtatgca-attctgatttaatttctaaattgcacatgtca |
91 |
Q |
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||||||||||| |||| ||| ||||||||||||||||| ||| ||||| | ||||||||||||||||||||||||| |||||| |
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| T |
33431832 |
atcattaatttatgctatgttctttcaatttacttacaaacttt-gtatggatattctgatttaatttctaaattgcatatgtca |
33431749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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