View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_40 (Length: 237)
Name: NF4299_low_40
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 48818775 - 48818995
Alignment:
| Q |
1 |
tgaactgtttctttaacaggaaattggtgtcggcgtgttcttgttgacaaaggtgagttatggtataaagttttgacagatatgaggtagaaagtgggcg |
100 |
Q |
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| T |
48818775 |
tgaactgtttctttaacaagaaattggtgtcggcgtgttcttgttgacaaaggtgagttatggtataaagttttgacaaatatgaggtagaaagtgggtg |
48818874 |
T |
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| Q |
101 |
cattagggagcggttcaaagggggtgttatggagtttgaaggtgactggttacaagtggtataggacatcgagttggtaatggtgaaagtttttcctttt |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48818875 |
cattagggagcggttcaaagggggtgttggggagtttgaaggtgactggttccagatggtataggacatcgagttggtaatggtgaaagtttttcctttt |
48818974 |
T |
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| Q |
201 |
ggaacgattcttggttagaga |
221 |
Q |
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|||||||| |||||||||||| |
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| T |
48818975 |
ggaacgatccttggttagaga |
48818995 |
T |
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