View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4299_low_41 (Length: 236)
Name: NF4299_low_41
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_41 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0047 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 6090786 - 6090566
Alignment:
| Q |
16 |
gaaagtgtatgcttgctgggaatgtatgcagcttgcagggaacactcgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatga |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6090786 |
gaaagtgtatgcttgctgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatga |
6090687 |
T |
|
| Q |
116 |
cnnnnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatctat |
215 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6090686 |
caaaaaaattcattacaaattcaattgctttttaaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatctat |
6090587 |
T |
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| Q |
216 |
gccattcaaaaccttctttct |
236 |
Q |
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||||||||||||||| ||||| |
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| T |
6090586 |
gccattcaaaaccttttttct |
6090566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 26034162 - 26034382
Alignment:
| Q |
16 |
gaaagtgtatgcttgctgggaatgtatgcagcttgcagggaacactcgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatga |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26034162 |
gaaagtgtatgcttgctgggaatgtatgcagcttgcagagaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatga |
26034261 |
T |
|
| Q |
116 |
cnnnnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatctat |
215 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26034262 |
caaaaaaattcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatatatcatcctagtgggtgggtcatgctgcaaacaaatctat |
26034361 |
T |
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| Q |
216 |
gccattcaaaaccttctttct |
236 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
26034362 |
gccattcaaaaccttctttct |
26034382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 52105991 - 52105772
Alignment:
| Q |
16 |
gaaagtgtatgcttgctgggaatgtatgcagcttgcagggaacactcgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatga |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52105991 |
gaaagtgtatgcttgctgg-aatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatga |
52105893 |
T |
|
| Q |
116 |
cnnnnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatctat |
215 |
Q |
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| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
52105892 |
caaaaaaattcattacaaattcaattgcttttttaaagttcaaaattaatgttttaaatatatcatcctagtgggtgggtcatgctgcaaacaaatttat |
52105793 |
T |
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| Q |
216 |
gccattcaaaaccttctttct |
236 |
Q |
| |
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||||||||||||||||||||| |
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| T |
52105792 |
gccattcaaaaccttctttct |
52105772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 14834570 - 14834783
Alignment:
| Q |
23 |
tatgcttgctgggaatgtatgcagcttgcagggaacactcgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnn |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14834570 |
tatgcttgttgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaa |
14834669 |
T |
|
| Q |
123 |
nttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatctatgccattc |
222 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |
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| T |
14834670 |
attcattacaaattcagttgcttttttaaagttcaagattaatgttttaaatataccatcctaatgggtgggccatgctgcaaacaaatctatgtcattc |
14834769 |
T |
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| Q |
223 |
aaaaccttctttct |
236 |
Q |
| |
|
|||||||||||||| |
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| T |
14834770 |
aaaaccttctttct |
14834783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 23 - 236
Target Start/End: Original strand, 31404 - 31617
Alignment:
| Q |
23 |
tatgcttgctgggaatgtatgcagcttgcagggaacactcgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnn |
122 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31404 |
tatgcttgttgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaa |
31503 |
T |
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| Q |
123 |
nttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatctatgccattc |
222 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |
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| T |
31504 |
attcattacaaattcagttgcttttttaaagttcaagattaatgttttaaatataccatcctaatgggtgggccatgctgcaaacaaatctatgtcattc |
31603 |
T |
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| Q |
223 |
aaaaccttctttct |
236 |
Q |
| |
|
|||||||||||||| |
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|
| T |
31604 |
aaaaccttctttct |
31617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 5129 - 4916
Alignment:
| Q |
23 |
tatgcttgctgggaatgtatgcagcttgcagggaacactcgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnn |
122 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5129 |
tatgcttgttgggaatgtatgcagcttgcagggaacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaa |
5030 |
T |
|
| Q |
123 |
nttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatctatgccattc |
222 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| |
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| T |
5029 |
attcattacaaattcagttgcttttttaaagttcaagattaatgttttaaatataccatcctaatgggtgggccatgctgcaaacaaatctatgtcattc |
4930 |
T |
|
| Q |
223 |
aaaaccttctttct |
236 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4929 |
aaaaccttctttct |
4916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 48158442 - 48158663
Alignment:
| Q |
16 |
gaaagtgtatgcttgctgggaatgtatgcagcttgcagggaacactcgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48158442 |
gaaagtgtatgcttgctgggaatgtatgcagcttgcaggaaacacgcgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatga |
48158541 |
T |
|
| Q |
116 |
cnnnnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatctat |
215 |
Q |
| |
|
| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
48158542 |
caaaaaaatttattacaaattcaattgtttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatatat |
48158641 |
T |
|
| Q |
216 |
gcca-ttcaaaaccttctttct |
236 |
Q |
| |
|
|| | ||||||||||||||||| |
|
|
| T |
48158642 |
gctatttcaaaaccttctttct |
48158663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 41806958 - 41807182
Alignment:
| Q |
16 |
gaaagtgtatgcttgctgggaatgtatgcagcttgcagggaacactc----gaggatggtggtggtaacattgtaggatttataagcttcttaatccttc |
111 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41806958 |
gaaagtgtatgcttgcggggaatgtatgcagcttgcagggaacacacacacgaggatggtggtggtaacattgtaggatttataagcttcttaatccttc |
41807057 |
T |
|
| Q |
112 |
atgacnnnnnnnttcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaat |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
41807058 |
atgacaaaaaaattcattacaaattcaattgcttttttaaagttcaagattaatgttttaaatataccatcctagtggatgggtcaagctgcaaacaaat |
41807157 |
T |
|
| Q |
212 |
ctatgccattcaaaaccttctttct |
236 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
41807158 |
ctatgtcattcaaaaccttctttct |
41807182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 38 - 236
Target Start/End: Original strand, 6231623 - 6231817
Alignment:
| Q |
38 |
tgtatgcagcttgcagggaacactcgaggatggtggtggtaacattgtaggatttataagcttcttaatccttcatgacnnnnnnnttcattacaaattc |
137 |
Q |
| |
|
|||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
6231623 |
tgtatgcatcttgtagggaacacacgaggatggtgggggtaacattgtaggatttataagcttcttaatccttcatgacaaaaaaattcgttacaaattc |
6231722 |
T |
|
| Q |
138 |
aattgcttttttaaagttcaagattaatgttttaaatataccatcctagtgggtgggtcatgctgcaaacaaatctatgccattcaaaaccttctttct |
236 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
6231723 |
acttgcttttttaaagttcaagattaatgttttaaatatatcatccta----gtgggtcatgctgcaaacaaatctatgccattcaaaagcttctttct |
6231817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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