View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4299_low_6 (Length: 580)
Name: NF4299_low_6
Description: NF4299
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4299_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 43880112 - 43879856
Alignment:
| Q |
19 |
tccatgcattagtttagcaatttatacttgttttctatgaaattcagtagtgaaacattttaaactctggttaaaccagtgccttgataaatgagaaaaa |
118 |
Q |
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| T |
43880112 |
tccatgcattagtttagcaatttatacttgttttctatgaaattcagtagtgaaacattttaaactctggttaaaccagtgccttgataaatgagaaaaa |
43880013 |
T |
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| Q |
119 |
catatgaatgaaataggcataaactggttttgtatcggttaaccgttaagagctcatgtgtcgtgaatggtgataattctcaatctcaaggaaccttctt |
218 |
Q |
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| T |
43880012 |
catatgaatgaaataggcataaactggttttgtatcggttaaccgttaagagctcatgtgtggtgaatggtgataattc------tcaaggaaccttgtt |
43879919 |
T |
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| Q |
219 |
agtaggaggatgtgtagctcgattgattg----agctaactgattgaatgagtatttagttaa |
277 |
Q |
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| T |
43879918 |
agtaggaggatgtgcagctcgattgattgagctagctaactgattgaatgagtatgtagttaa |
43879856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 464 - 577
Target Start/End: Complemental strand, 43879685 - 43879572
Alignment:
| Q |
464 |
ttggaactttatgcccagaataaagttgagatactctccctgtatttgtacgcattgaattaattacttttaatttgccatatgctacaaatttaagatc |
563 |
Q |
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| T |
43879685 |
ttggaactttatgcccagaataaagttgagatactctccctgtatttgtacgcattgaattaattacttttattttgccctatgctacaaatttaagatc |
43879586 |
T |
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| Q |
564 |
ttttaagacttcat |
577 |
Q |
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| T |
43879585 |
ttttaagacttcat |
43879572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 332 - 405
Target Start/End: Complemental strand, 43879774 - 43879701
Alignment:
| Q |
332 |
cacatgccatactgaaacaataaccaattaagaaggtgcctctatttctatttcaaatatgcacacgacacgac |
405 |
Q |
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| T |
43879774 |
cacatgccatactgaaacaataaccaattaagaaggtgcctctatttctatttcaaatatgcacacgacacgac |
43879701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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