View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4300_high_1_N (Length: 412)

Name: NF4300_high_1_N
Description: NF4300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4300_high_1_N
NF4300_high_1_N
[»] chr4 (8 HSPs)
chr4 (2-403)||(38970778-38971185)
chr4 (80-220)||(10801148-10801288)
chr4 (80-220)||(10996301-10996441)
chr4 (11-185)||(13089065-13089244)
chr4 (285-370)||(7623748-7623833)
chr4 (285-370)||(10801320-10801405)
chr4 (164-222)||(7623863-7623921)
chr4 (285-370)||(10996184-10996269)
[»] chr2 (5 HSPs)
chr2 (2-403)||(35595341-35595748)
chr2 (2-403)||(4966577-4966984)
chr2 (2-285)||(37390549-37390838)
chr2 (2-163)||(37390289-37390456)
chr2 (293-403)||(37391048-37391158)
[»] chr5 (8 HSPs)
chr5 (2-403)||(37572246-37572653)
chr5 (10-403)||(33889256-33889655)
chr5 (80-223)||(5021886-5022029)
chr5 (80-223)||(34608955-34609098)
chr5 (285-370)||(34608826-34608911)
chr5 (80-223)||(22124879-22125022)
chr5 (285-370)||(22125066-22125151)
chr5 (285-364)||(5022073-5022152)
[»] chr7 (3 HSPs)
chr7 (2-403)||(7303481-7303888)
chr7 (2-403)||(18339364-18339771)
chr7 (285-370)||(6052765-6052850)
[»] chr3 (1 HSPs)
chr3 (2-403)||(33906420-33906827)
[»] chr6 (2 HSPs)
chr6 (10-403)||(13509873-13510272)
chr6 (158-403)||(4446853-4447098)
[»] scaffold0029 (2 HSPs)
scaffold0029 (80-220)||(58973-59113)
scaffold0029 (285-370)||(59145-59230)
[»] chr8 (4 HSPs)
chr8 (80-220)||(15742301-15742441)
chr8 (80-223)||(28953839-28953982)
chr8 (287-370)||(28953710-28953793)
chr8 (285-370)||(15742184-15742269)


Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 2 - 403
Target Start/End: Original strand, 38970778 - 38971185
Alignment:
2 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaac 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
38970778 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcatacaaaggtgtattactttcactcaac 38970877  T
96 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38970878 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 38970977  T
196 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38970978 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 38971077  T
296 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaacnnnnnnnaggtgtttcttcacatct 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
38971078 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatct 38971177  T
396 ccaggatc 403  Q
    ||||||||    
38971178 ccaggatc 38971185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 80 - 220
Target Start/End: Original strand, 10801148 - 10801288
Alignment:
80 attactttcactcaacaatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacc 179  Q
    ||||| ||||||||||||  ||||||||||||| || | |||||| ||||||| |||  |||  |||||||||||||| |||  |||||||||||||||     
10801148 attacattcactcaacaactggtaaaatctttgggcttgctcatttgggggttcttcaccttgttcatcttcaacatcatcattgtaagacaattccaca 10801247  T
180 cctaaagcgtccgcaaccatatcatccatcatgttgaattg 220  Q
    |||||||| || || |||||||||| |||||||||||||||    
10801248 cctaaagcatcagcgaccatatcattcatcatgttgaattg 10801288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 80 - 220
Target Start/End: Complemental strand, 10996441 - 10996301
Alignment:
80 attactttcactcaacaatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacc 179  Q
    ||||| ||||||||||||  ||||||||||||| || | |||||| ||||||| |||  |||  |||||||||||||| |||  |||||||||||||||     
10996441 attacattcactcaacaactggtaaaatctttgggcttgctcatttgggggttcttcaccttgttcatcttcaacatcatcattgtaagacaattccaca 10996342  T
180 cctaaagcgtccgcaaccatatcatccatcatgttgaattg 220  Q
    |||||||| || || |||||||||| |||||||||||||||    
10996341 cctaaagcatcagcgaccatatcattcatcatgttgaattg 10996301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 185
Target Start/End: Complemental strand, 13089244 - 13089065
Alignment:
11 ataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaacaatcggtaa 104  Q
    |||||| || ||||||| || ||||| |||||||||||||| ||||  ||||||| ||||||||       |||||||||||||| | | |||| || ||    
13089244 ataattggagttatgagctataagcctcacacacatagataacttattgtgcgaaaacccttcaaacaatggtgtattactttcatttagcaattgg-aa 13089146  T
105 aatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaa 185  Q
    |||||  |||| |||||||||||| |||||||| ||  ||||||||||||||| ||  ||||||||||||||||| |||||    
13089145 aatctccgcgctttctcattcgggagttgttcccctcgatcatcttcaacatcatcgtcgtaagacaattccaccactaaa 13089065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 7623833 - 7623748
Alignment:
285 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaac 370  Q
    ||||||||||||||||| || ||||||||||| |||||   |||||| |||||  ||||||||||||||| ||||||||| |||||    
7623833 gaagcttgtgcattgactcccaccccaaaattttgaaattgttcaccgttataaatccaaacccaataatcaggcataaatccaac 7623748  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 370
Target Start/End: Original strand, 10801320 - 10801405
Alignment:
285 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaac 370  Q
    ||||||||||||||||| ||  |||||||||| ||||||  |||||| |||||  ||||||||||||||| ||||||||| |||||    
10801320 gaagcttgtgcattgactcccgccccaaaattttgaaactgttcaccgttataaatccaaacccaataatcaggcataaatccaac 10801405  T

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Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 7623921 - 7623863
Alignment:
164 gtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgtt 222  Q
    ||||||||||||||| |||||||| || || |||||||||| |||||||||||||||||    
7623921 gtaagacaattccacacctaaagcatcagcgaccatatcattcatcatgttgaattgtt 7623863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 10996269 - 10996184
Alignment:
285 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaac 370  Q
    ||||||||||||||||| ||  |||||||||| |||||   |||||| |||||  ||||||||||||||| ||||||||| |||||    
10996269 gaagcttgtgcattgactcccgccccaaaattttgaaattgttcaccgttataaatccaaacccaataatcaggcataaatccaac 10996184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 2 - 403
Target Start/End: Complemental strand, 35595748 - 35595341
Alignment:
2 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaac 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
35595748 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcatacaaaggtgtattactttcactcaac 35595649  T
96 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35595648 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 35595549  T
196 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
35595548 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 35595449  T
296 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaacnnnnnnnaggtgtttcttcacatct 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
35595448 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatct 35595349  T
396 ccaggatc 403  Q
    ||||||||    
35595348 ccaggatc 35595341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 2 - 403
Target Start/End: Original strand, 4966577 - 4966984
Alignment:
2 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaac 95  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
4966577 aggattaagatagttcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcatacaaaggtgtattactttcactcaac 4966676  T
96 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4966677 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 4966776  T
196 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 295  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4966777 ccatatcatccatcatgttgaattgatctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 4966876  T
296 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaacnnnnnnnaggtgtttcttcacatct 395  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
4966877 attgacccctgccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatct 4966976  T
396 ccaggatc 403  Q
    ||||||||    
4966977 ccaggatc 4966984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 2 - 285
Target Start/End: Original strand, 37390549 - 37390838
Alignment:
2 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaac 95  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||      ||||||||||||||||||||    
37390549 aggattaagataatttgacttatgagataaaagccacacacacatagatagcttagagtacgaagatccttcatacaaaggtgtattactttcactcaac 37390648  T
96 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37390649 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 37390748  T
196 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtag 285  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
37390749 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggccagtag 37390838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 37390289 - 37390456
Alignment:
2 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaac 95  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||      ||||||||||||||||||||    
37390289 aggattaagataatttgacttatgagataaaagccacacacacatagatagcttagagtacgaagacccttcatacaaaggtgtattactttcactcaac 37390388  T
96 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcacc 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
37390389 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcatcacc 37390456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 293 - 403
Target Start/End: Original strand, 37391048 - 37391158
Alignment:
293 tgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaacnnnnnnnaggtgtttcttcaca 392  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||       | |||||||||||||    
37391048 tgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaagtataaaatcaactttttttaagtgtttcttcaca 37391147  T
393 tctccaggatc 403  Q
    |||||||||||    
37391148 tctccaggatc 37391158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 360; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 2 - 403
Target Start/End: Original strand, 37572246 - 37572653
Alignment:
2 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaac 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
37572246 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcatacaaaggtgtattactttcactcaac 37572345  T
96 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
37572346 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcatccgcaa 37572445  T
196 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
37572446 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 37572545  T
296 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaacnnnnnnnaggtgtttcttcacatct 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
37572546 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatct 37572645  T
396 ccaggatc 403  Q
    ||||||||    
37572646 ccaggatc 37572653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 403
Target Start/End: Original strand, 33889256 - 33889655
Alignment:
10 gataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaacaatcggta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||    
33889256 gataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcatacaaaggtgtattactttcactcaacaatcggta 33889355  T
104 aaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
33889356 aaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcatccgcaaccatatca 33889455  T
204 tccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgaccc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
33889456 tccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgtttcaccatggctagtagaagcttgtgcattgaccc 33889555  T
304 ctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaacnnnnnnnaggtgtttcttcacatctccaggatc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
33889556 ctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatctccaggatc 33889655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 5021886 - 5022029
Alignment:
80 attactttcactcaacaatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacc 179  Q
    ||||| |||| |||||||   |||||||||||| || | |||||| |||||||||||  |||  ||||||||||| || | |  ||||||||||||||      
5021886 attacattcattcaacaactcgtaaaatctttgggcttgctcatttgggggttgttcgccttgttcatcttcaacgtcattattgtaagacaattccata 5021985  T
180 cctaaagcgtccgcaaccatatcatccatcatgttgaattgttc 223  Q
    |||||||| || || |||||||||| ||||||||||||||||||    
5021986 cctaaagcatcagcgaccatatcattcatcatgttgaattgttc 5022029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 34609098 - 34608955
Alignment:
80 attactttcactcaacaatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacc 179  Q
    ||||| |||| |||||||   ||||||||| || || | |||||| |||||||||||  |||  ||||||||||| || | |  |||||||||||||||     
34609098 attacattcattcaacaactcgtaaaatctctgggcttgctcatttgggggttgttcgccttgttcatcttcaacgtcattattgtaagacaattccaca 34608999  T
180 cctaaagcgtccgcaaccatatcatccatcatgttgaattgttc 223  Q
    |||||||| || || |||||||||| ||||||||||||||||||    
34608998 cctaaagcatcagcgaccatatcattcatcatgttgaattgttc 34608955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 34608911 - 34608826
Alignment:
285 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaac 370  Q
    ||||||||||||||||| || |||||||||||||||||   |||||| |||||  ||||||||||||||| ||||||||| |||||    
34608911 gaagcttgtgcattgactcccaccccaaaattctgaaattgttcaccgttataaatccaaacccaataatcaggcataaatccaac 34608826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 80 - 223
Target Start/End: Original strand, 22124879 - 22125022
Alignment:
80 attactttcactcaacaatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacc 179  Q
    ||||| |||| |||||||   ||||||||| || || | |||||| |||||||||||  |||  ||||||||||  || | |  |||||||||||||||     
22124879 attacattcattcaacaacttgtaaaatctctgggcttgctcatttgggggttgttcgccttgttcatcttcaatgtcattattgtaagacaattccaca 22124978  T
180 cctaaagcgtccgcaaccatatcatccatcatgttgaattgttc 223  Q
    |||||||| || || |||||||||| ||||||||||||||||||    
22124979 cctaaagcatcagcgaccatatcattcatcatgttgaattgttc 22125022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 370
Target Start/End: Original strand, 22125066 - 22125151
Alignment:
285 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaac 370  Q
    ||||||||||||||||| || ||||||||||| |||||   |||||| |||||  ||||||||||||||| | ||||||| |||||    
22125066 gaagcttgtgcattgactcccaccccaaaattttgaaattgttcaccgttataaatccaaacccaataatcatgcataaatccaac 22125151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 285 - 364
Target Start/End: Original strand, 5022073 - 5022152
Alignment:
285 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaa 364  Q
    ||||||||||||||||| || ||||||||| | |||||   |||||| |||||  ||||||||||||||| | |||||||    
5022073 gaagcttgtgcattgactcccaccccaaaaatttgaaattgttcaccgttataaatccaaacccaataatcaagcataaa 5022152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 2 - 403
Target Start/End: Original strand, 7303481 - 7303888
Alignment:
2 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaac 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
7303481 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcatacaaaggtgtattactttcactcaac 7303580  T
96 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
7303581 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcatccgcaa 7303680  T
196 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7303681 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 7303780  T
296 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaacnnnnnnnaggtgtttcttcacatct 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       ||||||||||||||||||    
7303781 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaatccaataattaggcataaaaccaactttttttaggtgtttcttcacatct 7303880  T
396 ccaggatc 403  Q
    ||||||||    
7303881 ccaggatc 7303888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 2 - 403
Target Start/End: Original strand, 18339364 - 18339771
Alignment:
2 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaac 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
18339364 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcatacaaaggtgtattactttcactcaac 18339463  T
96 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 195  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
18339464 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccataagacaattccacccctaaagcgtccgcaa 18339563  T
196 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
18339564 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 18339663  T
296 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaacnnnnnnnaggtgtttcttcacatct 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||     
18339664 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatcc 18339763  T
396 ccaggatc 403  Q
    ||||||||    
18339764 ccaggatc 18339771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 285 - 370
Target Start/End: Original strand, 6052765 - 6052850
Alignment:
285 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaac 370  Q
    ||||||||||||||||||||| |||||||||| |||||   |||||| |||||   |||||||||||||||||||||||| |||||    
6052765 gaagcttgtgcattgacccctgccccaaaattttgaaattgttcaccgttataaacccaaacccaataattaggcataaatccaac 6052850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 2 - 403
Target Start/End: Original strand, 33906420 - 33906827
Alignment:
2 aggattaagataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaac 95  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||    
33906420 aggattaagatagttcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcatacaaaggtgtattactttcactcaac 33906519  T
96 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33906520 aatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaa 33906619  T
196 ccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 295  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
33906620 ccatatcatccatcatgttgaattgatctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgc 33906719  T
296 attgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaacnnnnnnnaggtgtttcttcacatct 395  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||    
33906720 attgacccctgccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatct 33906819  T
396 ccaggatc 403  Q
    ||||||||    
33906820 ccaggatc 33906827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 10 - 403
Target Start/End: Complemental strand, 13510272 - 13509873
Alignment:
10 gataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcat------gtgtattactttcactcaacaatcggta 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||    
13510272 gataattcgacttatgagataaaagccacacacacatagatagcttagagtgcgaagacccttcatacaaaggtgtattactttcactcaacaatcggta 13510173  T
104 aaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcgtccgcaaccatatca 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
13510172 aaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacccctaaagcatccgcaaccatatca 13510073  T
204 tccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgttccaccatggctagtagaagcttgtgcattgaccc 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
13510072 tccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtttccacatttgtttcaccatggctagtagaagcttgtgcattgaccc 13509973  T
304 ctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaacnnnnnnnaggtgtttcttcacatctccaggatc 403  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
13509972 ctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaactttttttaggtgtttcttcacatctccaggatc 13509873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 158 - 403
Target Start/End: Original strand, 4446853 - 4447098
Alignment:
158 ttcaccgtaagacaattccacccctaaagcgtccgcaaccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtt 257  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4446853 ttcaccgtaagacaattccacccctaaagcatccgcaaccatatcatccatcatgttgaattgttctgtgttgacatcttcattgtattccacatttgtt 4446952  T
258 tccacatttgttccaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattag 357  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4446953 tccacatttgtttcaccatggctagtagaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattag 4447052  T
358 gcataaaaccaacnnnnnnnaggtgtttcttcacatctccaggatc 403  Q
    |||||||||||||       ||||||||||||||||||||||||||    
4447053 gcataaaaccaactttttttaggtgtttcttcacatctccaggatc 4447098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 80 - 220
Target Start/End: Original strand, 58973 - 59113
Alignment:
80 attactttcactcaacaatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacc 179  Q
    ||||| ||||||||||||  ||||||||||||| || | |||||| ||||||| |||  |||  |||||||||||||| |||  |||||||||||||||     
58973 attacattcactcaacaactggtaaaatctttgggcttgctcatttgggggttcttcaccttgttcatcttcaacatcatcattgtaagacaattccaca 59072  T
180 cctaaagcgtccgcaaccatatcatccatcatgttgaattg 220  Q
    |||||||| || || |||||||||| |||||||||||||||    
59073 cctaaagcatcagcgaccatatcattcatcatgttgaattg 59113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 370
Target Start/End: Original strand, 59145 - 59230
Alignment:
285 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaac 370  Q
    ||||||||||||||||| ||  |||||||||| ||||||  |||||| |||||  ||||||||||||||| ||||||||| |||||    
59145 gaagcttgtgcattgactcccgccccaaaattttgaaactgttcaccgttataaatccaaacccaataatcaggcataaatccaac 59230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 80 - 220
Target Start/End: Complemental strand, 15742441 - 15742301
Alignment:
80 attactttcactcaacaatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacc 179  Q
    ||||| ||||||||||||  ||||||||||||| || | |||||| ||||||| |||  |||  |||||||||||||| |||  |||||||||||||||     
15742441 attacattcactcaacaactggtaaaatctttgggcttgctcatttgggggttcttcaccttgttcatcttcaacatcatcattgtaagacaattccaca 15742342  T
180 cctaaagcgtccgcaaccatatcatccatcatgttgaattg 220  Q
    |||||||| || || |||||||||| |||||||||||||||    
15742341 cctaaagcatcagcgaccatatcattcatcatgttgaattg 15742301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 80 - 223
Target Start/End: Complemental strand, 28953982 - 28953839
Alignment:
80 attactttcactcaacaatcggtaaaatctttgcgccttctcattcgggggttgttcctcttcatcatcttcaacatcttcaccgtaagacaattccacc 179  Q
    ||||| |||| |||||||   ||||||||| || || | |||||| |||||||||||  |||  ||||||||||| || | |  |||||||||||||||     
28953982 attacattcattcaacaactcgtaaaatctctgggcttgctcatttgggggttgttcgccttgttcatcttcaacgtcattattgtaagacaattccaca 28953883  T
180 cctaaagcgtccgcaaccatatcatccatcatgttgaattgttc 223  Q
    |||||||| || || |||||||||| ||||||||||||||||||    
28953882 cctaaagcatcagcgaccatatcattcatcatgttgaattgttc 28953839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 370
Target Start/End: Complemental strand, 28953793 - 28953710
Alignment:
287 agcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaac 370  Q
    ||||||||||||||| || ||||||||||| |||||   |||||| |||||  ||||||||||||||| | ||||||| |||||    
28953793 agcttgtgcattgactcccaccccaaaattttgaaattgttcaccgttataaatccaaacccaataatcaagcataaatccaac 28953710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 370
Target Start/End: Complemental strand, 15742269 - 15742184
Alignment:
285 gaagcttgtgcattgacccctaccccaaaattctgaaacatttcaccattatatgtccaaacccaataattaggcataaaaccaac 370  Q
    ||||||||||||||||| ||  |||||||||| |||||   |||||| |||||  ||||||||||||||  ||||||||| |||||    
15742269 gaagcttgtgcattgactcccgccccaaaattttgaaattgttcaccgttataaatccaaacccaataaacaggcataaatccaac 15742184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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