View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4300_high_3 (Length: 369)

Name: NF4300_high_3
Description: NF4300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4300_high_3
NF4300_high_3
[»] chr7 (12 HSPs)
chr7 (110-360)||(36221990-36222235)
chr7 (110-323)||(36217999-36218207)
chr7 (116-326)||(35938799-35939004)
chr7 (136-327)||(32727038-32727224)
chr7 (119-327)||(35976915-35977118)
chr7 (119-327)||(35998327-35998530)
chr7 (116-323)||(35981485-35981687)
chr7 (116-323)||(36002897-36003099)
chr7 (204-327)||(35957460-35957583)
chr7 (204-308)||(35946271-35946375)
chr7 (208-309)||(35951909-35952010)
chr7 (1-45)||(36221882-36221926)
[»] chr1 (2 HSPs)
chr1 (119-324)||(18125183-18125383)
chr1 (136-324)||(18117530-18117713)
[»] chr2 (1 HSPs)
chr2 (223-327)||(26329140-26329244)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 110 - 360
Target Start/End: Original strand, 36221990 - 36222235
Alignment:
Q  110 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgcaagagaccatgagat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||     ||||||||||||||| |||||||||||||||    
T  36221990 tgtgctggagttccgctggctgtcaaaacattaggaagttctctgttatcaaaatttgatttaa-----ataagtggatattcgtaagagaccatgagat 36222084  T
Q  210 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttcc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222085 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttcc 36222184  T
Q  310 ttgtatcccaaagattattcattttctattgttgaaattacttgtctgtgg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222185 ttgtatcccaaagattattcattttctattgttgaaattacttgtctgtgg 36222235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 110 - 323
Target Start/End: Original strand, 36217999 - 36218207
Alignment:
Q  110 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgcaagagaccatgagat 209  Q
    ||||||||||||||||||||||| | |||  ||||||||||||| |||||||||||||||||| ||     |||||| |||| | |||||||||||||||    
T  36217999 tgtgctggagttccgctggctgtgagaacggtaggaagttctctgttctcaaaatttgatttagat-----aagtggttatttgtaagagaccatgagat 36218093  T
Q  210 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttcc 309  Q
     ||||| |||||||| ||||||| ||||||||||||||| |||||||||||||||||| |||||||||| ||| |||| || |||||||||| |||||||    
T  36218094 atggaatttagaacagaagaaagatgatattttacctgctttaaaattaagctatgatcaaatgccatcatatctgagacaatgttttgcttgtttttcc 36218193  T
Q  310 ttgtatcccaaaga 323  Q
    ||||||||||||||    
T  36218194 ttgtatcccaaaga 36218207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 116 - 326
Target Start/End: Complemental strand, 35939004 - 35938799
Alignment:
Q  116 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgcaagagaccatgagatttggaa 215  Q
    |||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||     ||||||  ||| | ||||||   |||||| |||||    
T  35939004 ggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaat-----aagtgggaatttgtaagagattctgagatatggaa 35938910  T
Q  216 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtat 315  Q
     |||||||| ||| ||  |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||| | |||    
T  35938909 tttagaacagaagcaaaatgatattttacctgcactaaaattaagctatgatcaaatgccatcctacttgaggcactgttttgcttatttttccctatat 35938810  T
Q  316 cccaaagatta 326  Q
    |||||||||||    
T  35938809 cccaaagatta 35938799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 136 - 327
Target Start/End: Complemental strand, 32727224 - 32727038
Alignment:
Q  136 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgcaagagaccatgagatttggaacttagaacaaaagaaaggtg 235  Q
    ||||||| |||||||  |||||||||||| ||||||||||     ||||||||||| |  |||||   |||||| ||||| |||||||| ||||||| ||    
T  32727224 aacattacgaagttccttattctcaaaatatgatttaaat-----aagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatg 32727130  T
Q  236 atattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattat 327  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||||||  |||||| | |||||||||||||||    
T  32727129 atattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattat 32727038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 119 - 327
Target Start/End: Complemental strand, 35977118 - 35976915
Alignment:
Q  119 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgcaagagaccatgagatttggaactt 218  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||  || |||  |||||| ||||| ||    
T  35977118 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35977024  T
Q  219 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatccc 318  Q
    |||||||||||||| || ||||||||||||  ||||||||||||||||| |||||||||| ||| |||| || ||||||| |||| ||||| | ||||||    
T  35977023 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatccc 35976924  T
Q  319 aaagattat 327  Q
    |||||||||    
T  35976923 aaagattat 35976915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 119 - 327
Target Start/End: Complemental strand, 35998530 - 35998327
Alignment:
Q  119 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgcaagagaccatgagatttggaactt 218  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||  |||||  || |||  |||||| ||||| ||    
T  35998530 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35998436  T
Q  219 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatccc 318  Q
    |||||||||||||| || ||||||||||||  ||||||||||||||||| |||||||||| ||| |||| || ||||||| |||| ||||| | ||||||    
T  35998435 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatccc 35998336  T
Q  319 aaagattat 327  Q
    |||||||||    
T  35998335 aaagattat 35998327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 116 - 323
Target Start/End: Complemental strand, 35981687 - 35981485
Alignment:
Q  116 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgcaagagaccatgagatttggaa 215  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||||||     |||||| |||| | ||| ||   |||| | |||||    
T  35981687 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgatttaaat-----aagtgggtatttgtaagggattctgagttatggaa 35981593  T
Q  216 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtat 315  Q
      |||| || ||||||| |||||||||||||||  | || ||||| |||||| |||||||||||||||||||||| ||||||||||| |||||| | |||    
T  35981592 tctagagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctat 35981493  T
Q  316 cccaaaga 323  Q
    ||||||||    
T  35981492 cccaaaga 35981485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 116 - 323
Target Start/End: Complemental strand, 36003099 - 36002897
Alignment:
Q  116 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgcaagagaccatgagatttggaa 215  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||||||     |||||| |||| | ||| ||   |||| | |||||    
T  36003099 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgatttaaat-----aagtgggtatttgtaagggattctgagttatggaa 36003005  T
Q  216 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtat 315  Q
      |||| || ||||||| |||||||||||||||  | || ||||| |||||| |||||||||||||||||||||| ||||||||||| |||||| | |||    
T  36003004 tctagagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctat 36002905  T
Q  316 cccaaaga 323  Q
    ||||||||    
T  36002904 cccaaaga 36002897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 204 - 327
Target Start/End: Complemental strand, 35957583 - 35957460
Alignment:
Q  204 tgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttat 303  Q
    |||||| ||||| |||||||||||||    |||||||||||||||  |||||||||| |||||| |||||||||| ||| |||| || ||||||||||||    
T  35957583 tgagatgtggaatttagaacaaaagattaatgatattttacctgcgctaaaattaagttatgatcaaatgccatcatatctgagacaatgttttgcttat 35957484  T
Q  304 ttttccttgtatcccaaagattat 327  Q
    |||||| | |||||||||||||||    
T  35957483 ttttccctttatcccaaagattat 35957460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 204 - 308
Target Start/End: Complemental strand, 35946375 - 35946271
Alignment:
Q  204 tgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttat 303  Q
    |||||| ||||| |||||||||||||||| |||||| ||||||||  |||||||||| |||||| |||||||||| ||| | || || ||||||||||||    
T  35946375 tgagatgtggaatttagaacaaaagaaagatgatatcttacctgcgctaaaattaagttatgatcaaatgccatcatatctaagacaatgttttgcttat 35946276  T
Q  304 ttttc 308  Q
    |||||    
T  35946275 ttttc 35946271  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 208 - 309
Target Start/End: Complemental strand, 35952010 - 35951909
Alignment:
Q  208 atttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttattttt 307  Q
    |||||||| ||||||||| |||||| |||||||||||||||  | ||||||||||||||| ||||| |||||||| | || |||||| |||| | |||||    
T  35952010 atttggaatttagaacaacagaaagatgatattttacctgccctgaaattaagctatgatcaaatgtcatcctatctaagacattgtattgcctcttttt 35951911  T
Q  308 cc 309  Q
    ||    
T  35951910 cc 35951909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 36221882 - 36221926
Alignment:
Q  1 ctttcgcaagagagctatttgtatttgtttgtgaaatgggcattt 45  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  36221882 ctttcgcaagagagctgtttgtatttgtttgtgaaatgggcattt 36221926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 119 - 324
Target Start/End: Complemental strand, 18125383 - 18125183
Alignment:
Q  119 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgcaagagaccatgagatttggaactt 218  Q
    ||||| || ||||| | ||||||||||||||| ||||||||||||||||||||||||  |     |||||||| | ||||||   |||| | ||||| ||    
T  18125383 gttccactagctgttagaacattaggaagttccctattctcaaaatttgatttaaataca-----tggatatttgtaagagattctgagctgtggaattt 18125289  T
Q  219 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatccc 318  Q
    | ||||  | |||| |||||||||||||||| ||||||| ||||||||  |||||||||||||||| ||||| || ||||||||||| ||| | |||||     
T  18125288 aaaacagcaaaaagatgatattttacctgcactaaaattgagctatgaccaaatgccatcctatttaaggcaatgctttgcttatttctccctttatcct 18125189  T
Q  319 aaagat 324  Q
    ||||||    
T  18125188 aaagat 18125183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 324
Target Start/End: Complemental strand, 18117713 - 18117530
Alignment:
Q  136 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtggatattcgcaagagaccatgagatttggaacttagaacaaaagaaaggtg 235  Q
    |||||||||||| | ||| || |||||||||||||||||| ||     |||  | | |||||||||  |||||| ||||  |||||||||||| ||  ||    
T  18117713 aacattaggaagctgtctgttttcaaaatttgatttaaataaa-----tgggaacttgcaagagactctgagatgtggactttagaacaaaagcaaaatg 18117619  T
Q  236 atattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaagat 324  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||| ||||| || ||||||||  || |  ||||||||||||||    
T  18117618 atattttacctgcactaaaattaagctatgataaaatgccatcctatttaaggcactgctttgcttacattgctatgtatcccaaagat 18117530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 327
Target Start/End: Original strand, 26329140 - 26329244
Alignment:
Q  223 caaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaag 322  Q
    ||||| |||| ||||||||||||||   | || |||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | | ||||||||    
T  26329140 caaaacaaagatgatattttacctgtgcttaagttaagctatgatcaaatgccatcctatttgagacattgttttgcttatttttccctttttcccaaag 26329239  T
Q  323 attat 327  Q
    |||||    
T  26329240 attat 26329244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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