View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4300_high_6 (Length: 334)
Name: NF4300_high_6
Description: NF4300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4300_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 45037215 - 45036907
Alignment:
| Q |
1 |
cattgaagtaaagtgaaggaggttgacccatttcctttggccaatgcactttttctggacattgttgacaataaccgattttgtattgtggtgtgtgact |
100 |
Q |
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| T |
45037215 |
cattgaagtaaagtgaaggaggttgacccatttcctttggccaatgaactttttctggacattgttgacaataaccgattttgtattgtggtgtgtgact |
45037116 |
T |
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| Q |
101 |
ccaagttctctcgcaaaaacaatccataacagcgtagaaatgaccatctggtagatcaaagagatggtctatgttttcataaacttgaatgtctccgtcc |
200 |
Q |
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| T |
45037115 |
ccaagttctctcgcaaaaacaatccataacagcgtagaaatgaccatctggtagatcaaagagatggtctatgttttcataaacttgaatgtctccgtcc |
45037016 |
T |
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| Q |
201 |
aagtatatcatcttgctgtattccacaaactgtaacataataaatatagctcaaataagtacactttccttcctagttttatggtgcacagatttatttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45037015 |
aagtatatcatcttgctgtattccacaaactgtaacataataaatatagctcaaataagtacactttccttcctagttttatggtgcacagatttatttt |
45036916 |
T |
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| Q |
301 |
atgaatcat |
309 |
Q |
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||||||||| |
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| T |
45036915 |
atgaatcat |
45036907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 231
Target Start/End: Original strand, 45944411 - 45944585
Alignment:
| Q |
57 |
ggacattgttgacaataaccgattttgtattgtggtgtgtgactccaagttctctcgcaaaaacaatccataacagcgtagaaatgaccatctggtagat |
156 |
Q |
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|||||||||||||| || || || || || || || |||||||||||||| | || || ||||| ||||| ||||| ||||| | | |||| || |||| |
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| T |
45944411 |
ggacattgttgacagtatccaatcttatactgaggagtgtgactccaagtcttttcacagaaacagtccatcacagcatagaagtaatcatcaggcagat |
45944510 |
T |
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| Q |
157 |
caaagagatggtctatgttttcataaacttgaatgtctccgtccaagtatatcatcttgctgtattccacaaact |
231 |
Q |
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|||| ||||| || ||||||||| | ||||| ||||| || || ||||| |||||||||||||| ||| |||||| |
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| T |
45944511 |
caaatagatgatcaatgttttcaaacacttggatgtcaccatctaagtagatcatcttgctgtactcctcaaact |
45944585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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