View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4300_low_1 (Length: 490)
Name: NF4300_low_1
Description: NF4300
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4300_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 17 - 469
Target Start/End: Original strand, 26958849 - 26959297
Alignment:
| Q |
17 |
cagtaatcccaagcataagcattggctgaaacaaaagagccaaatcatagtctaatattggcacttgttttgttggatgagccactctcaaattatacca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26958849 |
cagtaatcccaagcataagcattggctgaaacaaaagagccaaatcatagtctaatattggcacttgttttgttggatgagccactctcaaattatacca |
26958948 |
T |
|
| Q |
117 |
aactgatgatgctgatgcccccattatcatacctaaaaccaattccacaacaccaaaatagaaaaaacttgtcacaaatttcaatcaatggtatatttct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26958949 |
aactgatgatgctgatgcccccattatcatacctaaaaccaattccacaacaccaaaatagaaaaaacttgtcacaaatttcaatcaatgatatatttct |
26959048 |
T |
|
| Q |
217 |
taaaaacatcacatagtcaaaaagaataaactttgataccaccggtgccagtgagtgagtgttttaaaccctagagtaccaagttcatcgagggttgtgt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26959049 |
taaaaacatcacatagtcaaaaagaataaactttgataccaccggtgccagtgtgtgagtgttttaaaccctagagtaccaagttcatcgagggttgtgt |
26959148 |
T |
|
| Q |
317 |
gtgtgaatattgtaaacctagaataccgagtttgattcctactaataagaaacattgatacaagtgaaggtcagtttgtgtgaatgttgtaaatcctgga |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26959149 |
gtgtgaatattgtaaacctagaataccgagtttgattcctactaataagaaacattgataccagtgaaggtcagtttgtgtgaatgttgtaaatcctgga |
26959248 |
T |
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| Q |
417 |
gtaccaattaagttccattcctacttattagacacactgataccgatgagtat |
469 |
Q |
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||||| ||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
26959249 |
gtacc----gagttcgattcctactagttagacacactgataccgatgagtat |
26959297 |
T |
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