View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4301_high_1 (Length: 548)
Name: NF4301_high_1
Description: NF4301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4301_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 247 - 532
Target Start/End: Complemental strand, 3262966 - 3262681
Alignment:
| Q |
247 |
aacacgtggacacagatggaaattgaatataatcacaaggactcagacacatgtcgaacaccggaattgccaatagagaagagaaaaggaataactcact |
346 |
Q |
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| T |
3262966 |
aacacgtggacacagatggaaattgaatataatcacaaggactcagacacatgtcgaacaccggaattgccaatagagaagagaaaaggaacaactcacg |
3262867 |
T |
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| Q |
347 |
gtgttttgggctaaaccaagctgaataacaccatcaggattatgaatccgatgataaggattatctgcgactttgtttaaacctaagtaataaggagagt |
446 |
Q |
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| T |
3262866 |
gtgttttgggctaaaccaagctgaataacaccatcaggattatgaatccgatgataaggattatctgcgactttgtttaaacctacgtaataaggagagt |
3262767 |
T |
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| Q |
447 |
ttgttgtgattatggaattgacccgacccgaaatattagcggaggcggttgaacctctgattcgaggtgagagagtgcgtgacaag |
532 |
Q |
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| T |
3262766 |
ttgttgtgattatggaattgacccgacccgaaatattagcggaggcggttgaacctctgatccgaggtgagagagtgcgtgacaag |
3262681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 251
Target Start/End: Complemental strand, 3263230 - 3262996
Alignment:
| Q |
17 |
caaaggtacaaagataggaagtaattacccaccactttgaagtccatgaatccatggtaagtagcaaggtcagtgatactgaggcaaccacaatttgatg |
116 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3263230 |
caaaggtacaaagataggatgtaattacccaccactttgaagtccatgaatccatggtaagtagcaaggtcagtgatactgaggcaaccacaatttgatg |
3263131 |
T |
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| Q |
117 |
gtgtccctaatatagcagcgcttccattgtgacgaatccattcttcaatcaaatccacacatagctacaacaaacaagaacagtcacaaatgcaattgta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3263130 |
gtgtccctaatatagcagcgcttccattgtgacgaatccattcttcaatcaaatccacacatagctacaacaaacaagaacagtcacaaatgcaattgta |
3263031 |
T |
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| Q |
217 |
gcttcgaaaataacataagagaagccataaaacac |
251 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
3263030 |
gcttcgaaaataacataagagaagccataaaacac |
3262996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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