View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4301_high_2 (Length: 539)
Name: NF4301_high_2
Description: NF4301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4301_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 520
Target Start/End: Original strand, 1172518 - 1173007
Alignment:
| Q |
11 |
cacagaacctgcaaaatagattttgaactttagtcattggtagggtttagggtttaggaaagggagttatataaagggtgagacgaaaattgagaatcta |
110 |
Q |
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| T |
1172518 |
cacagaacctgcaaaatagattttgaactttagtcattggtagggtttagggttttggaaagggagttatataaagggtgagatgagaattgagagtcta |
1172617 |
T |
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| Q |
111 |
aagtgtaaccctaaaaactggtccaattaatgacaacctattacaagagtggattagcaaatcaacttgatattaaaattaatattaagaattgaacatg |
210 |
Q |
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| T |
1172618 |
aagtgtacccctaaaaactggtccaattaatgacaacctattacacaa-tggattagcaaatcaacttgatattaaaattaatattaagaatcgaaca-- |
1172714 |
T |
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| Q |
211 |
ttgaaacatcaatcataaataaggcattctgacttacttaggcacatgcatgaacaaacaaacaataaattcgatagcgataatatatatacatgctgaa |
310 |
Q |
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| T |
1172715 |
-------aacaaaca---ataa---attc-gacttacttaggcacatgcatgaacaaacaaacaataaattcgatagcgataatatatatacatgctgaa |
1172800 |
T |
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| Q |
311 |
attaatattaagagtttaatatgcatacctgaaagtgagaaacttgaaacaaagtgaagaattgtgaataacaagcaaattaaacgacgattataactct |
410 |
Q |
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| T |
1172801 |
attaatattaagagtttaatatgcatacctgaaagtgagaaacttgaaacaaagtgaagaattgtgaataacaagc-----aaacgacgattataactct |
1172895 |
T |
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| Q |
411 |
caatatcgactgactctttttgtttccctcaagaagatgtatgtattccttc--aagtagggttgaggtatttatatgaagtgttaccaaagaaataaag |
508 |
Q |
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| T |
1172896 |
caatatcgactgactctttttgtttccctcaagaacatttatgtattcgttcttaagtagggttgaggtatttatatgaagtgttaccaaagaaataaag |
1172995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 1181795 - 1181907
Alignment:
| Q |
65 |
taggaaagggagttatataaagggtgagacgaaaattgagaatctaaagtgtaaccctaaaaactggtccaattaatgacaacctattacaagagtggat |
164 |
Q |
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|||||||||||| |||||||| ||||||| || || ||||||||||| ||| | |||||||||| ||||| |||||| ||||||||| | | ||||| |
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| T |
1181795 |
taggaaagggagatatataaaaggtgagaagagaactgagaatctaatgtggagccctaaaaacgggtcc----aatgacgacctattactacaatggat |
1181890 |
T |
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| Q |
165 |
tagcaaatcaacttgat |
181 |
Q |
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| T |
1181891 |
tagcaaatcaacttgat |
1181907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 249 - 292
Target Start/End: Original strand, 1182388 - 1182431
Alignment:
| Q |
249 |
taggcacatgcatgaacaaacaaacaataaattcgatagcgata |
292 |
Q |
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| T |
1182388 |
taggcacatgcatgaacaaacaaacaataaattcgatagcgata |
1182431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 411 - 450
Target Start/End: Original strand, 1165110 - 1165149
Alignment:
| Q |
411 |
caatatcgactgactctttttgtttccctcaagaagatgt |
450 |
Q |
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| T |
1165110 |
caatgtcgactgactcttttggtttccctcaagaagatgt |
1165149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 377
Target Start/End: Original strand, 1182462 - 1182525
Alignment:
| Q |
317 |
attaagagtttaatatgcata--cctgaaag-tgagaaacttgaaacaaagtgaagaattgtga |
377 |
Q |
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| T |
1182462 |
attaagaattaaatatgtatatacctgaaaggtgagaaacttgaaacaaagtgaagacttgtga |
1182525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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