View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4301_high_6 (Length: 351)
Name: NF4301_high_6
Description: NF4301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4301_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 43 - 313
Target Start/End: Complemental strand, 32314962 - 32314692
Alignment:
| Q |
43 |
tttgaggggattaaccctcttatcagggataatgaaatcataattaacttttctaccaccaaaccaannnnnnnaatacaatgctaccaatccaatttgt |
142 |
Q |
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| T |
32314962 |
tttgtggggattaaccctcttatcagggataatgaaatcatgatcaacttttctaccaccaaaccaatttttttaatacaatgctaccaaaccagtttgt |
32314863 |
T |
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| Q |
143 |
cggggtgaagaaagtgttatttcgatgagatcttgtcttagaaatatatattttttaattataatgtcaacaaaaagggtaaatgaatgaaaaggtaatt |
242 |
Q |
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| T |
32314862 |
cggggtgaagaaagtgttatttcaatgagatattgtcttagtgatatatattttttaattagaatgtcaacaaaaaggctaaatgaatgaaaaggtaatt |
32314763 |
T |
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| Q |
243 |
tcagctatttttgcttcacacgatttaacatgcgttgctagtatatttttaaaacaaacaatgttaatatt |
313 |
Q |
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| T |
32314762 |
tcaggtatttttgcttcacacgatttaacatgcgttgctagtatatttttaaaacaaacaatgttaatatt |
32314692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 299 - 345
Target Start/End: Complemental strand, 32314673 - 32314627
Alignment:
| Q |
299 |
aacaatgttaatattgttaactatatattgttatagccatgcattac |
345 |
Q |
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| T |
32314673 |
aacaatgttaatattgttaacaatatattgttatagccatgcattac |
32314627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 5215692 - 5215732
Alignment:
| Q |
2 |
tacactcaaaaaatttgagtgtaccataaaatttgccatatt |
43 |
Q |
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| T |
5215692 |
tacactcaaaatatt-gagtgtaccataaaatttgccatatt |
5215732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 48977246 - 48977290
Alignment:
| Q |
1 |
gtacactcaaaaaatttgagtgtaccataaaatttgccatatttt |
45 |
Q |
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||||||||||| | |||||||||||||| ||||||||||||||| |
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| T |
48977246 |
gtacactcaaatatattgagtgtaccatagaatttgccatatttt |
48977290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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