View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4301_high_9 (Length: 226)
Name: NF4301_high_9
Description: NF4301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4301_high_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 669565 - 669339
Alignment:
| Q |
1 |
tcatcacttaattttttcccctcttcttcttgctcatatcttcatcatctttcatcatgttcaaaaggttcaatcttttccagaannnnnnnnnn-aaac |
99 |
Q |
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| T |
669565 |
tcatcacttaattttttcccctcttcttcttgctcatatcttcatcatctttcatcatgttcaaaaggttcaatcttttccagatttttttttttgaaac |
669466 |
T |
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| Q |
100 |
tcaattttcaatcaatcacaacaacaacttcttcataattcaactttatcaaaaaattccataaatttaattgaataattgctatgatttcaattttaat |
199 |
Q |
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| T |
669465 |
tcaattttcaatcaaccacaacaacaacttcttcataattcaactttatcaaaaaattctataaatttaattgaataattgctatgatttcaattttaat |
669366 |
T |
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| Q |
200 |
aaatctctaatttacttctttgattcc |
226 |
Q |
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| T |
669365 |
aaatctctaatttacttctttgattcc |
669339 |
T |
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Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 106 - 219
Target Start/End: Original strand, 52627927 - 52628040
Alignment:
| Q |
106 |
ttcaatcaatcacaacaacaacttcttcataattcaactttatcaaaaaattccataaatttaattgaataattgctatgatttcaattttaataaatct |
205 |
Q |
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| T |
52627927 |
ttcaatcaaccacaaaagcaacttcttcatcattcatctttctaaaaaaattccataaattaaattgaataatttctatgatttcaattttaataaatct |
52628026 |
T |
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| Q |
206 |
ctaatttacttctt |
219 |
Q |
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| T |
52628027 |
ctaatttgcttctt |
52628040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 219
Target Start/End: Complemental strand, 27965624 - 27965530
Alignment:
| Q |
125 |
aacttcttcataattcaactttatcaaaaaattccataaatttaattgaataattgctatgatttcaattttaataaatctctaatttacttctt |
219 |
Q |
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| T |
27965624 |
aacttcttcatcattcatctttctaaaaaacttccataaattaaattgaataatttctatgatttcaattttaataaatatctaatttgcttctt |
27965530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 9170770 - 9170704
Alignment:
| Q |
19 |
ccctcttcttcttgctcatatcttcatcatctttcatcatgttcaaaaggttcaatcttttccagaa |
85 |
Q |
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| T |
9170770 |
ccctcttcttcttcctcatatcttcatcatctttcatcatgttcaaaaggttcaaccttttccagaa |
9170704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 45395905 - 45395842
Alignment:
| Q |
19 |
ccctcttcttcttgctcatatcttcatcatctttcatcatgttcaaaaggttcaatcttttcca |
82 |
Q |
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| T |
45395905 |
ccctcttcttcttcctcatatcttcatcatctttcatcatgttcaaaatgttcaaccttatcca |
45395842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 3823273 - 3823325
Alignment:
| Q |
119 |
aacaacaacttcttcataattcaactttatcaaaaaattccataaatttaatt |
171 |
Q |
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| T |
3823273 |
aacaacaacttcttcataattcaactttctccaaatattccataaattaaatt |
3823325 |
T |
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