View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4301_low_10 (Length: 234)
Name: NF4301_low_10
Description: NF4301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4301_low_10 |
 | |
|
| [»] scaffold0102 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 14791047 - 14791266
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14791047 |
tgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
14791146 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14791147 |
tcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
14791246 |
T |
|
| Q |
201 |
atcaattgtctcttgatctt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
14791247 |
atcaattgtctcttgatctt |
14791266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 20112035 - 20111815
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggtt-atgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatc |
99 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
20112035 |
tgaacttgttggaaaaagaacaaggttttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttactgttccatc |
20111936 |
T |
|
| Q |
100 |
atcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcat |
199 |
Q |
| |
|
|||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20111935 |
atcactcatgtctcatcttcaaaatcaatcactttttaaccctcattcaaatggattttctttttggagcagcgatgagattaccaacaacaatgatcat |
20111836 |
T |
|
| Q |
200 |
catcaattgtctcttgatctt |
220 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
20111835 |
catcaattgtctcttgatctt |
20111815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 5348093 - 5348312
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5348093 |
tgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
5348192 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5348193 |
tcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
5348292 |
T |
|
| Q |
201 |
atcaattgtctcttgatctt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
5348293 |
atcaattgtctcttgatctt |
5348312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36429659 - 36429881
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
36429659 |
tgaacttgtttgaaaaagaacaaggtttatgatgaatagcatggacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatca |
36429758 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatg---atc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
36429759 |
tcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcttttttggagcagcgatgagattaccaacaacaatgatcatc |
36429858 |
T |
|
| Q |
198 |
atcatcaattgtctcttgatctt |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36429859 |
atcatcaattgtctcttgatctt |
36429881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 26380069 - 26380278
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| ||| |||| || || || || ||| | ||||||||||||||||||||||| |||||||||| |
|
|
| T |
26380069 |
tgaacttgttggaaaaagaacaaggtttatgatgaataacattaacaacagcaacagcaacaatggttcttctcattctcatgatgttactgttccatca |
26380168 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaacc------ctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatg |
194 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
26380169 |
tcactcatgtctcatcttcagaatcaatcaatctttaaccctcaggctcattcaaatgggtttcctttttggagcagcgatgagattatcaataacaatg |
26380268 |
T |
|
| Q |
195 |
atcatcatca |
204 |
Q |
| |
|
|||||||||| |
|
|
| T |
26380269 |
atcatcatca |
26380278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 54560403 - 54560622
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54560403 |
tgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
54560502 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54560503 |
tcactcatgtctcctcttcataatcaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
54560602 |
T |
|
| Q |
201 |
atcaattgtctcttgatctt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
54560603 |
atcaattgtctcttgatctt |
54560622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 50838007 - 50837784
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50838007 |
tgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctcattctcatgatgttattgttccatca |
50837908 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaa-ccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaaca---atgat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| || || |
|
|
| T |
50837907 |
tcactcatgtctcctcttcagaatcaatcactttttaacccctcattcaaatggatttcctttttggagcagcgatgaaattatcaacaacactgatcat |
50837808 |
T |
|
| Q |
197 |
catcatcaattgtctcttgatctt |
220 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
50837807 |
catcatcaattgtctcttgatctt |
50837784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 47471070 - 47471292
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
47471070 |
tgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaacatcaacatcaacggttcttctcattctcatgatgttactgttccatca |
47471169 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatg---atc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
47471170 |
tcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattaccaacaacaatgatcatc |
47471269 |
T |
|
| Q |
198 |
atcatcaattgtctcttgatctt |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
47471270 |
atcatcaattgtctcttgatctt |
47471292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 15347802 - 15348021
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
15347802 |
tgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatattattgttccatca |
15347901 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15347902 |
tcactcatgtctcctctttagaatcaatcactttttaaccctcattcaaatggatttccattttggagcagcgatgagattatcaacaacaatgatcatc |
15348001 |
T |
|
| Q |
201 |
atcaattgtctcttgatctt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
15348002 |
atcaattgtctcttgatctt |
15348021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 17732564 - 17732342
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17732564 |
tgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacagcaacgtttcttctcattctcatgatgttattgttccatca |
17732465 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
17732464 |
tcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacactgatcatc |
17732365 |
T |
|
| Q |
201 |
---atcaattgtctcttgatctt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17732364 |
atcatcaattgtctcttgatctt |
17732342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 30709870 - 30710092
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
|||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
30709870 |
tgaacttgtttgaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatca |
30709969 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatg---atc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
30709970 |
tcactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcttttttggagcagcgatgagattaccaacaacaatgatcatc |
30710069 |
T |
|
| Q |
198 |
atcatcaattgtctcttgatctt |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
30710070 |
atcatcaattgtctcttgatctt |
30710092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 6009174 - 6008961
Alignment:
| Q |
4 |
acttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatcatca |
103 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
6009174 |
acttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaacatcaacatcaatgtttcttctcattctcat------attgttccatcatca |
6009081 |
T |
|
| Q |
104 |
ctcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc--- |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6009080 |
ctcatgtctcctcttcagaatcaatcacttttgaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatcatc |
6008981 |
T |
|
| Q |
201 |
atcaattgtctcttgatctt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
6008980 |
atcaattgtctcttgatctt |
6008961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 4592995 - 4593208
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4592995 |
tgaacttgttggaaaaagaacaagggttatgatgaatagcatgaacaccaac------atcaacgtttcttctcattctcatgatgttattgttccatca |
4593088 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4593089 |
tcactcatgtctcctcttcataatcaatcactttttaaccctcattcaaatgaatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
4593188 |
T |
|
| Q |
201 |
atcaattgtctcttgatctt |
220 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4593189 |
atcaattgtctcttgatctt |
4593208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 10256074 - 10256296
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
10256074 |
tgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatca |
10256173 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatg---atc |
197 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
10256174 |
tcactcatgtctcctcttgagaatcaatcactttctaaccctcattcaaatggatttccattttggagcagcgatgagattaccaacaacaatgatcatc |
10256273 |
T |
|
| Q |
198 |
atcatcaattgtctcttgatctt |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10256274 |
atcatcaattgtctcttgatctt |
10256296 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 27455297 - 27455519
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
27455297 |
tgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaacaacggttcttctcattctcatgatgttactgttccatca |
27455396 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatg---atc |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
27455397 |
tcactcatgtctcctcttcagaataaatcactttttaaccctcattcaaatggatttcctttttggagcagcgatgagattaccaacaacaatgatcatc |
27455496 |
T |
|
| Q |
198 |
atcatcaattgtctcttgatctt |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
27455497 |
atcatcaattgtctcttgatctt |
27455519 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 49681812 - 49681602
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
|||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
49681812 |
tgaaattgttggaaaaagaacaacgtttatgatgaatagcatgaacaacaacatcaacaacaacgattcttctcattctcatgatgttactgttccatca |
49681713 |
T |
|
| Q |
101 |
tcact------catgtctcc-tcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaat |
193 |
Q |
| |
|
||||| ||||||| |||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49681712 |
tcactgaatagcatgtcttaatctttagaatcaatcactttttaaccctcattcaaatgggtttcctttttggagcagcgatgagattatcaacaacaat |
49681613 |
T |
|
| Q |
194 |
gatcatcatca |
204 |
Q |
| |
|
||||||||||| |
|
|
| T |
49681612 |
gatcatcatca |
49681602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0102 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0102
Description:
Target: scaffold0102; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32729 - 32951
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
32729 |
tgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatca |
32828 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatg---atc |
197 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| |
|
|
| T |
32829 |
tcactcatgtctccttttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcagtgatgagattaccaacaacaatgatcatc |
32928 |
T |
|
| Q |
198 |
atcatcaattgtctcttgatctt |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32929 |
atcatcaattgtctcttgatctt |
32951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 47445530 - 47445308
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |
|
|
| T |
47445530 |
tgaacttgttggaaaaagaacaaggtttataatgaatagcatgaacaacaacatcaacagcaacggttcttctcattctcatgatgttactgttccatca |
47445431 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
47445430 |
ccactcatgtctcctcttcagaatcaatcactttttaaccctcattcaaatggatttcctttttggagcaacgatgagattaccaacaacaatgatcatc |
47445331 |
T |
|
| Q |
201 |
atc---aattgtctcttgatctt |
220 |
Q |
| |
|
||| ||||||||||||||||| |
|
|
| T |
47445330 |
atcataaattgtctcttgatctt |
47445308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 36067692 - 36067914
Alignment:
| Q |
1 |
tgaacttgttggaaaaagaacaaaggttatgatgaatagcatgaacaccaacatcaacatcaacgtttcttctcattctcatgatgttattgttccatca |
100 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
36067692 |
tgaacttgttggaaaaagaacaaggtttatgatgaatagcatgaacaacaacatcaacaataacggttcttctcattctcatgatgttactgttccatcg |
36067791 |
T |
|
| Q |
101 |
tcactcatgtctcctcttcagaatcaatcaatttttaaccctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatg---atc |
197 |
Q |
| |
|
| |||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36067792 |
taactcatgtctcctcttcaaaatcaatcactttttaactctcattcaaatggatttcctttttggagcagcgatgagattatcaacaacaatgatcatc |
36067891 |
T |
|
| Q |
198 |
atcatcaattgtctcttgatctt |
220 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36067892 |
atcatcaattgtctcttgatctt |
36067914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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