View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4301_low_3 (Length: 491)
Name: NF4301_low_3
Description: NF4301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4301_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 18 - 482
Target Start/End: Original strand, 37961157 - 37961621
Alignment:
| Q |
18 |
atgacgcgagtgttgtcttgttcggtacgaggtggaggtaaatttggaacaagatggtgccagttttgagcatcttgtgaatcagatacgaggatattga |
117 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961157 |
atgatgcgagtgttgtcttgttcggtacgaggtggaggtaaatttggaacaagatggtgccagttttgagcatcttgtgaatcagatacgaggatattga |
37961256 |
T |
|
| Q |
118 |
agtctgctgaggattcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttatgggaatttggagggacgatgaggtt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37961257 |
agtctgctgaggattcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttttgggaatttggagggacgatgaggtt |
37961356 |
T |
|
| Q |
218 |
agaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatgg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961357 |
agaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatgg |
37961456 |
T |
|
| Q |
318 |
tagaagaagatacgttgaattgggtgacaataaaaccatggtatgtcgaagaaagttaagggtagaatggttggtgatgtaagtgaatttggtggtggtg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37961457 |
tagaagaagatacgttgaattgggtgacaataaaaccatggtatgtcgaagaaagttaagggtagaatggttggtgatgtaagtgaatttggtggtggtg |
37961556 |
T |
|
| Q |
418 |
caacttgactatgttctatcaccttcatggtgaacttggtctcgtgagttatgtttgtgtctgtg |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37961557 |
caacttgactatgttctatcaccttcatggtgaacttggtctcgtgagttatgtttgtgtttgtg |
37961621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 28 - 445
Target Start/End: Complemental strand, 37906901 - 37906481
Alignment:
| Q |
28 |
tgttgtcttgttcggtacgaggtggaggtaaatttggaacaagatggtgccagttttgagcatcttgtgaatcagatacgaggatattgaagtctgctga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37906901 |
tgttgtcttgttcggtacgaggtggaggtaaatttggaacgagatggtgccagttttgagcatcttgtgaatcagatacgaggatgttgaagtctgctga |
37906802 |
T |
|
| Q |
128 |
ggattcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttatgggaatttggagggacgatgaggttagaggaaaaa |
227 |
Q |
| |
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|||||||||||| |||||||| |||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||||||| |||| || |
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| T |
37906801 |
ggattcagctacagtgaaggaaatagagtcttcatcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaag |
37906702 |
T |
|
| Q |
228 |
gggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaaga |
327 |
Q |
| |
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|| ||||||||| | ||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||| |
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| T |
37906701 |
ggaaagaagtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaaga |
37906602 |
T |
|
| Q |
328 |
tacgttgaa---ttgggtgacaataaaaccatggtatgtcgaagaaagttaagggtagaatggttggtgatgtaagtgaatttggtggtggtgcaacttg |
424 |
Q |
| |
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|||||| || | || ||||| |||||||||| ||||||||||| || | || || | |||||||||| ||||||||||||||||||||||||||| |
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| T |
37906601 |
tacgtttaacagtgggttgacagtaaaaccatgaaatgtcgaagaaggtgagagggagtgttgttggtgatggaagtgaatttggtggtggtgcaacttg |
37906502 |
T |
|
| Q |
425 |
actatgttctatcaccttcat |
445 |
Q |
| |
|
||||||||||| |||||||| |
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|
| T |
37906501 |
gctatgttctattaccttcat |
37906481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 35 - 445
Target Start/End: Complemental strand, 37915057 - 37914644
Alignment:
| Q |
35 |
ttgttcggtacgaggtggaggtaaatttggaacaagatggtgccagttttgagcatcttgtgaatcagatacgaggatattgaagtctgctgaggattca |
134 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
37915057 |
ttgttcagtacgaggtggaggtaaatttggaacaagagggtgccaattttgagcatcttgtgaatcagatatgaggatgttgaagtctgctgaggattca |
37914958 |
T |
|
| Q |
135 |
gctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaaggatcggtgttatgggaatttggagggacgatgaggttagaggaaaaagggaaga |
234 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||||||| |||| || || |||| |
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|
| T |
37914957 |
gctatggtgaaggagatagagtcttcatcaaggtaacgtatgaaaggaggagtgttatgggaatttggagggatgatgaggttggaggtgaagggaaaga |
37914858 |
T |
|
| Q |
235 |
agtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatacgttg |
334 |
Q |
| |
|
||||| | ||||||| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||| |||| |
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|
| T |
37914857 |
agtgttgaagggttaaggaaagtgagtgtttgagaataggaagtgttgtttggaggaagtgatgagttgggtgaggaaagtggtagaagaagatgcgttt |
37914758 |
T |
|
| Q |
335 |
aattggg---tgacaataaaaccatggtatgtcgaagaaagttaagggtagaatggttggtgatgtaagtgaatttggtggtggtgcaacttgactatgt |
431 |
Q |
| |
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|| ||| | || |||||||| | ||||| |||||||| | || | | |||||||||| ||||||| |||||||||||| || |||| | || |
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| T |
37914757 |
aagggggggtttgcagtaaaaccaagaaatgtcaaagaaagtgagagggattctcgttggtgatggaagtgaacttggtggtggtgaaatttgagtctgc |
37914658 |
T |
|
| Q |
432 |
tctatcaccttcat |
445 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37914657 |
tctatcaccttcat |
37914644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 231 - 391
Target Start/End: Complemental strand, 3782967 - 3782807
Alignment:
| Q |
231 |
aagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgaggaaaatggtagaagaagatac |
330 |
Q |
| |
|
||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||| || || |||||||||||||||||||| |||||||||||||| | |
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| T |
3782967 |
aagaagtgttcgagggtgatggaaagagagtgtttgagaatgggaagtattgtttggagaaagtgatgagttggatgaggaaagtggtagaagaagatgc |
3782868 |
T |
|
| Q |
331 |
gttgaattgggtgacaataaaaccatggtatgtcgaagaaagttaagggtagaatggttgg |
391 |
Q |
| |
|
||| ||| | |||| |||||||||| ||||| ||||| || | ||| ||||||||||| |
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|
| T |
3782867 |
gtttaatggttcgacagcaaaaccatggaatgtccaagaatgtgaggggaagaatggttgg |
3782807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 3783084 - 3783017
Alignment:
| Q |
114 |
ttgaagtctgctgaggattcagctacggtgaaggagatagagtcttcatcgaggtaacgtatgtaagg |
181 |
Q |
| |
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||||||| |||| |||||||||| | ||||||||||| ||||||| ||| |||||| ||||| ||||| |
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|
| T |
3783084 |
ttgaagtttgctaaggattcagcaatggtgaaggagagagagtctccattgaggtagcgtatataagg |
3783017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 4957761 - 4957855
Alignment:
| Q |
216 |
ttagaggaaaaagggaagaagtgtaggagggttatggaaagtgagtgtttgagaatgggaagtgttgtttgaaggaaatgatgagttggatgagg |
310 |
Q |
| |
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|||||||| ||||||||||| ||| |||| || | |||||| |||| ||||||||| || |||| ||||||||||| || || |||| |||||| |
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| T |
4957761 |
ttagaggagaaagggaagaaatgttggagagtgagggaaagagagtttttgagaattggtagtgaagtttgaaggaagtgttgtgttgaatgagg |
4957855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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