View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4301_low_5 (Length: 384)
Name: NF4301_low_5
Description: NF4301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4301_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 22050040 - 22049765
Alignment:
| Q |
1 |
tcatggactgaatttggaaaggactggaatttgtttacactattgaacaaatgtaaggaaggagatgttttgaagtttcgatttgtcaatcataatcact |
100 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22050040 |
tcatggactgaattcggaagggactggaatttgtttacactattgaacaaatgtaaggaaggagatgttttgaagtttcgatttgtcaatcataatcact |
22049941 |
T |
|
| Q |
101 |
caaatcttataatggttgcaaaaatgtgatttcgttatgaatctatgtcaattattgtatctttgtgttgaactacaataatatgttatctgtcatataa |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
22049940 |
caaatcttataatggttgcaaaaatgtgatttggttatgaatctatgtcaatta--gtatctttgtgttgaagtgcaataatatgttatctgtcatataa |
22049843 |
T |
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| Q |
201 |
gtttcgatctatctaccattatgtctgtaacaaatctcatgtcatcatcaattatatgtaatttgtttgctattataa |
278 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22049842 |
gtttggatctatctaccattatgtctgtaacaaatctcatgtcatcatcaattatatgtaatttgtttagtattataa |
22049765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 22049724 - 22049636
Alignment:
| Q |
280 |
tttcttttgctattatcccacaacaacatgaatccgtttattatataattaaacttttttatgtaaaatttaattttaacagtaataat |
368 |
Q |
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| T |
22049724 |
tttcttttgctattatcccacaccaacatgaatctgtttattatgtaattcaacttttttatttaaaatttaattttaacagtaataat |
22049636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 22059305 - 22059257
Alignment:
| Q |
64 |
gatgttttgaagtttcgatttgtcaatcataatcactcaaatcttataa |
112 |
Q |
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|||||||||||||| ||||||||| ||||||||| |||||||| |||| |
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| T |
22059305 |
gatgttttgaagttccgatttgtcgatcataatcgttcaaatctaataa |
22059257 |
T |
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