View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4301_low_6 (Length: 368)

Name: NF4301_low_6
Description: NF4301
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4301_low_6
NF4301_low_6
[»] chr2 (2 HSPs)
chr2 (5-349)||(43910159-43910512)
chr2 (276-332)||(31994823-31994879)
[»] chr6 (3 HSPs)
chr6 (289-348)||(10516682-10516741)
chr6 (267-346)||(12611793-12611872)
chr6 (267-348)||(25042925-25043005)
[»] scaffold0066 (1 HSPs)
scaffold0066 (284-346)||(14922-14984)
[»] chr5 (1 HSPs)
chr5 (288-350)||(2298899-2298961)
[»] chr8 (1 HSPs)
chr8 (267-348)||(12596850-12596931)
[»] chr7 (2 HSPs)
chr7 (267-348)||(27567757-27567838)
chr7 (267-332)||(34471235-34471300)
[»] chr4 (3 HSPs)
chr4 (282-350)||(40390884-40390952)
chr4 (234-332)||(38377820-38377916)
chr4 (267-350)||(15025771-15025855)
[»] scaffold0478 (1 HSPs)
scaffold0478 (267-348)||(3218-3299)
[»] chr3 (1 HSPs)
chr3 (276-348)||(39340767-39340839)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 5 - 349
Target Start/End: Complemental strand, 43910512 - 43910159
Alignment:
Q  5 gaggagcagagaatctgggtgggcaaccgaggtggacttcgctcatcacttcctcatcgccgccgtcttctttttccggcgacggagatgaatgttccat 104  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43910512 gaggaccagagaatctgggtgggcaaccgaggtggacttcgctcatcacttcctcatcgccgccgtcttctttttccggcgacggagatgaatgttccat 43910413  T
Q  105 tttgcatataccaaaatttaaataattaagggttatatacaaaattatacactttcaaagtttagtcctgc-nnnnnnnntattcacttttactcctt-- 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||      
T  43910412 tttgcatataccaaaatttaaataattaagggttatatacaaaattatacactttcaaagtttagtcctgcaaaaaaaaatattcacttttactccttca 43910313  T
Q  202 -----tatgaattatttttaagaca-nnnnnnnnaaacagtttttaaaatagagattattcttacaaattaaggattaatattactattaaatttttata 295  Q
         ||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43910312 ttttatatgaattatttttaagacatttttctttaaacagtttttaaaatagagattattcttacaaattaaggattaatattactattaaaattttata 43910213  T
Q  296 ggaattaaatttaaaagcttatgattttgtagggactccaaatatatttaacct 349  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  43910212 ggaattaaacttaaaaacttatgattttgtagggactccaaatatatttaacct 43910159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 31994823 - 31994879
Alignment:
Q  276 attactattaaatttttataggaattaaatttaaaagcttatgattttgtagggact 332  Q
    |||||||||||| ||||| ||| |||||| ||||||  || ||||||||||||||||    
T  31994823 attactattaaaattttaaagggattaaacttaaaaatttgtgattttgtagggact 31994879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 289 - 348
Target Start/End: Original strand, 10516682 - 10516741
Alignment:
Q  289 ttttataggaattaaatttaaaagcttatgattttgtagggactccaaatatatttaacc 348  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||  ||| ||||||||||    
T  10516682 ttttatagggactaaatttaaaaacttatgattttgtagggactaaaaacatatttaacc 10516741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 12611872 - 12611793
Alignment:
Q  267 aggattaatattactattaaatttttataggaattaaatttaaaagcttatgattttgtagggactccaaatatatttaa 346  Q
    |||| ||| ||||| |||||| ||||| ||| |||||||||||||  | |||||||||||||||||  ||| ||||||||    
T  12611872 aggactaaaattaccattaaaattttagagggattaaatttaaaaattcatgattttgtagggactaaaaacatatttaa 12611793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 25042925 - 25043005
Alignment:
Q  267 aggattaatattactattaaatttttataggaattaaatttaaaagcttatgattttgtagggactccaaatatatttaacc 348  Q
    |||| ||| ||||| |||||| |||||||||| | |||||| ||| || |||||||||||||||||  ||| ||||||||||    
T  25042925 aggactaaaattaccattaaaattttataggact-aaatttgaaaactcatgattttgtagggactaaaaacatatttaacc 25043005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 346
Target Start/End: Complemental strand, 14984 - 14922
Alignment:
Q  284 taaatttttataggaattaaatttaaaagcttatgattttgtagggactccaaatatatttaa 346  Q
    ||||||||| |||||| |||||||||||| |||| ||||||||||||||  ||| ||||||||    
T  14984 taaatttttttaggaactaaatttaaaagtttataattttgtagggactataaacatatttaa 14922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 2298961 - 2298899
Alignment:
Q  288 tttttataggaattaaatttaaaagcttatgattttgtagggactccaaatatatttaacctt 350  Q
    |||||||||| |||||| |||||||||| | ||||||||||||||  ||| ||||||||||||    
T  2298961 tttttatagggattaaacttaaaagcttgtaattttgtagggactataaacatatttaacctt 2298899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 12596931 - 12596850
Alignment:
Q  267 aggattaatattactattaaatttttataggaattaaatttaaaagcttatgattttgtagggactccaaatatatttaacc 348  Q
    |||| ||| ||||| |||||| ||||||||| | |||| |||||| ||||||||||||||| ||||  ||| ||||||||||    
T  12596931 aggactaaaattaccattaaaattttatagggactaaacttaaaaacttatgattttgtagagactaaaaacatatttaacc 12596850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 348
Target Start/End: Original strand, 27567757 - 27567838
Alignment:
Q  267 aggattaatattactattaaatttttataggaattaaatttaaaagcttatgattttgtagggactccaaatatatttaacc 348  Q
    |||| ||| ||||| |||||| ||||||||| | |||| || ||| || |||||||||||||||||  ||||||||||||||    
T  27567757 aggactaaaattaccattaaaattttatagggaataaactttaaaactcatgattttgtagggactaaaaatatatttaacc 27567838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 34471300 - 34471235
Alignment:
Q  267 aggattaatattactattaaatttttataggaattaaatttaaaagcttatgattttgtagggact 332  Q
    |||| ||| ||||| |||||| ||||||||| | |||| |||||||||| ||||||||||||||||    
T  34471300 aggactaaaattaccattaaaattttatagggactaaacttaaaagcttgtgattttgtagggact 34471235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 40390952 - 40390884
Alignment:
Q  282 attaaatttttataggaattaaatttaaaagcttatgattttgtagggactccaaatatatttaacctt 350  Q
    |||||| ||||||||||| |||| || ||| || |||||||||||||||||  ||| ||||||||||||    
T  40390952 attaaaattttataggaactaaacttgaaaactcatgattttgtagggactaaaaacatatttaacctt 40390884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 332
Target Start/End: Complemental strand, 38377916 - 38377820
Alignment:
Q  234 agtttttaaaatagagattattcttacaaattaaggattaatattactattaaatttttataggaattaaatttaaaagcttatgattttgtagggact 332  Q
    |||||||||||||| || |||||||| ||||||  || ||| ||||| |||||| ||||||||| | |||| ||||||  || |||||||||| |||||    
T  38377916 agtttttaaaatagggactattcttataaatta--gactaaaattaccattaaaattttatagggactaaacttaaaaatttgtgattttgtaaggact 38377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 350
Target Start/End: Complemental strand, 15025855 - 15025771
Alignment:
Q  267 aggattaatattactattaaatttttataggaattaaatttaaaagcttatgattttgtagggact-ccaaatatatttaacctt 350  Q
    |||||||| ||||| |||||| ||||||| ||| |||| |||| | ||  ||||||||||||||||   ||||||||||||||||    
T  15025855 aggattaaaattaccattaaaattttataagaactaaacttaataactcgtgattttgtagggactaaaaaatatatttaacctt 15025771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0478 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 348
Target Start/End: Complemental strand, 3299 - 3218
Alignment:
Q  267 aggattaatattactattaaatttttataggaattaaatttaaaagcttatgattttgtagggactccaaatatatttaacc 348  Q
    |||| ||| ||||| |||||| ||| ||||| |||||  |||||| || |||||||||||||||||  ||| ||||||||||    
T  3299 aggactaaaattaccattaaaatttcatagggattaagcttaaaaactcatgattttgtagggactaaaaacatatttaacc 3218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 348
Target Start/End: Complemental strand, 39340839 - 39340767
Alignment:
Q  276 attactattaaatttttataggaattaaatttaaaagcttatgattttgtagggactccaaatatatttaacc 348  Q
    ||||| ||||||  |||||||| | |||| |||||| ||  ||||||||||||||||| ||| ||||||||||    
T  39340839 attaccattaaaactttatagggactaaacttaaaaactagtgattttgtagggactcaaaacatatttaacc 39340767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University