View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4302-Insertion-11 (Length: 83)

Name: NF4302-Insertion-11
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4302-Insertion-11
NF4302-Insertion-11
[»] chr6 (3 HSPs)
chr6 (1-83)||(8383898-8383980)
chr6 (32-83)||(23593851-23593902)
chr6 (32-83)||(8383242-8383293)
[»] chr2 (1 HSPs)
chr2 (1-83)||(23462491-23462573)
[»] chr1 (3 HSPs)
chr1 (1-83)||(36272427-36272509)
chr1 (1-83)||(6767998-6768080)
chr1 (5-83)||(37422481-37422559)
[»] chr7 (1 HSPs)
chr7 (20-83)||(44541607-44541670)
[»] chr5 (1 HSPs)
chr5 (38-83)||(472961-473006)
[»] chr8 (1 HSPs)
chr8 (5-83)||(6013054-6013132)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 3e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-35
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 8383898 - 8383980
Alignment:
Q  1 agtttggtggtggttaaatgagagagatgacagtgaggttgaagacaaagttgggaaatatatagtgtgtgcagactataata 83  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  8383898 agtttggtggtggttaaatgagagagacgacagtgaggttgaagacaaagttgggaaatatatagtgtgtgcagaccataata 8383980  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 23593851 - 23593902
Alignment:
Q  32 agtgaggttgaagacaaagttgggaaatatatagtgtgtgcagactataata 83  Q
    ||||||||||||||||||||||||||| ||||||||| |||| |||||||||    
T  23593851 agtgaggttgaagacaaagttgggaaagatatagtgtatgcatactataata 23593902  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 8383293 - 8383242
Alignment:
Q  32 agtgaggttgaagacaaagttgggaaatatatagtgtgtgcagactataata 83  Q
    ||||||||||| |||||||| |||||| |||||||||||| ||| |||||||    
T  8383293 agtgaggttgatgacaaagtggggaaagatatagtgtgtgtagattataata 8383242  T

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Target: chr2 (Bit Score: 63; Significance: 5e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 23462573 - 23462491
Alignment:
Q  1 agtttggtggtggttaaatgagagagatgacagtgaggttgaagacaaagttgggaaatatatagtgtgtgcagactataata 83  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  23462573 agtttggtggtggtgaaatgatagagatgatagtgaggttgaagacaaagttgagaaagatatagtgtgtgcagactataata 23462491  T

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Target: chr1 (Bit Score: 63; Significance: 5e-28; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 5e-28
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 36272427 - 36272509
Alignment:
Q  1 agtttggtggtggttaaatgagagagatgacagtgaggttgaagacaaagttgggaaatatatagtgtgtgcagactataata 83  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  36272427 agtttggtggtggtgaaatgatagagatgatagtgaggttgaagacaaagttgagaaagatatagtgtgtgcagactataata 36272509  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 6767998 - 6768080
Alignment:
Q  1 agtttggtggtggttaaatgagagagatgacagtgaggttgaagacaaagttgggaaatatatagtgtgtgcagactataata 83  Q
    |||||||||||||| |||||| |||||||| |||||||||||||||||||||| |||| ||||| ||||||||||||||||||    
T  6767998 agtttggtggtggtgaaatgatagagatgatagtgaggttgaagacaaagttgagaaagatataatgtgtgcagactataata 6768080  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 4e-16
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 37422559 - 37422481
Alignment:
Q  5 tggtggtggttaaatgagagagatgacagtgaggttgaagacaaagttgggaaatatatagtgtgtgcagactataata 83  Q
    |||||||||| ||||||||||||||  |||||||||||||| |||||  ||||| ||| ||||| ||||||||||||||    
T  37422559 tggtggtggtgaaatgagagagatggtagtgaggttgaagataaagtctggaaagatacagtgtttgcagactataata 37422481  T

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Target: chr7 (Bit Score: 44; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 44541607 - 44541670
Alignment:
Q  20 gagagagatgacagtgaggttgaagacaaagttgggaaatatatagtgtgtgcagactataata 83  Q
    |||||| ||||  |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  44541607 gagagaaatgattgtgaggttgaagacaaagttgggaaagatatagtgtgtgcatactataata 44541670  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 472961 - 473006
Alignment:
Q  38 gttgaagacaaagttgggaaatatatagtgtgtgcagactataata 83  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||||    
T  472961 gttgaagacaaagttggaaaagatatagtgtgtgcagattataata 473006  T

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Target: chr8 (Bit Score: 31; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 6013132 - 6013054
Alignment:
Q  5 tggtggtggttaaatgagagagatgacagtgaggttgaagacaaagttgggaaatatatagtgtgtgcagactataata 83  Q
    |||||||||  ||||||||||||||  |||||||||||||| |||||  ||||| |||  |||| |||| |||||||||    
T  6013132 tggtggtggcgaaatgagagagatggtagtgaggttgaagataaagtctggaaagataccgtgtttgcatactataata 6013054  T

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