View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302-Insertion-14 (Length: 88)
Name: NF4302-Insertion-14
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302-Insertion-14 |
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Alignment Details
Target: chr5 (Bit Score: 71; Significance: 9e-33; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 9e-33
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 38783337 - 38783419
Alignment:
| Q |
5 |
atgaccctttcaacaatgatgaaaa-tgtgacctcattaattttccaagtgatacaatatacatcttaagaggatattctttt |
86 |
Q |
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| T |
38783337 |
atgaccctttcaacaatgttgaaaaatgtgacctcattaattttccaagtgatacaatatacatcttaagaggatattctttt |
38783419 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 5051096 - 5051043
Alignment:
| Q |
5 |
atgaccctttcaacaatgatgaaaa-tgtgacctcattaattttccaagtgata |
57 |
Q |
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| T |
5051096 |
atgaccctttcaacaatgatgaaaattgagacatcattaattttccaagtgata |
5051043 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 51274347 - 51274399
Alignment:
| Q |
5 |
atgaccctttcaacaatgatg-aaaatgtgacctcattaattttccaagtgat |
56 |
Q |
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| T |
51274347 |
atgaccctttcaacaatgatgaaaaatgtgaaatcattaattttcctagtgat |
51274399 |
T |
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