View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302-Insertion-15 (Length: 261)
Name: NF4302-Insertion-15
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302-Insertion-15 |
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| [»] chr2 (10 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 10)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 32183039 - 32183291
Alignment:
| Q |
9 |
tacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagtt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183039 |
tacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagtt |
32183138 |
T |
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| Q |
109 |
cttcatcaattgcaagagtgttgaaactcattggatgattgaacttgacatcatgacgccagctaccatattcatttgagtgaatcttgtttgccatgtc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183139 |
cttcatcaattgcaagagtgttgaaactcattggatgattgaacttgacatcatgacgccagctaccatattcatttgagtgaatcttgtttgccatgtc |
32183238 |
T |
|
| Q |
209 |
tccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaa |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32183239 |
tccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaa |
32183291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 32158741 - 32158988
Alignment:
| Q |
9 |
tacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagtt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
32158741 |
tacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctctagacctcacaaatttgtccaaatcattcttaatatccctttgaagct |
32158840 |
T |
|
| Q |
109 |
cttcatcaattgcaagagtgttgaaactcattggatgattgaacttgacatcatgacgccagctaccatattcatttgagtgaatcttgtttgccatgtc |
208 |
Q |
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| T |
32158841 |
cttcatcaattgcaagagtgtcgaaactcattggatgattaaacttgacatcaccagaccagct---atattcatttgagtaaatcttgattgccatgtc |
32158937 |
T |
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| Q |
209 |
tccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatc |
259 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32158938 |
tccttgtttaatctgtttagctatctccatcacataaggcaaatatgaatc |
32158988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 259
Target Start/End: Complemental strand, 32205828 - 32205571
Alignment:
| Q |
5 |
accgtacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttga |
104 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||| ||| ||||||||| |
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| T |
32205828 |
accgtacaacaagtaaccgcgttgccaagctttccctgttcttctataaaactctttggccttcacaaaattgtccaaatcattcataatttccctttga |
32205729 |
T |
|
| Q |
105 |
agttcttcatcaattgcaagagtgttgaaactcattggatgattgaacttgaca---tcatgacgccagctaccatattcatttgagtgaatcttgtttg |
201 |
Q |
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|| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |||||| |||||||||||||||||| | | |
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| T |
32205728 |
agctcttcatcaattgcaagagtgttgaaactcattggatggttgaacttgacaggttcatgactccagcaaccatagtcatttgagtgaatcttgatag |
32205629 |
T |
|
| Q |
202 |
ccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatc |
259 |
Q |
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|||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32205628 |
ccatgtttgcttctttaatttgtttagccatctccatcacataaggcaaatatgaatc |
32205571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 32111329 - 32111584
Alignment:
| Q |
9 |
tacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagtt |
108 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| ||||||||||| | |
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| T |
32111329 |
tacaacaagtaaccgcgtttccaagctttccctgttcttctataaaattctttagccctcacaaatttgtccaaatcattcttaatttccctttgaagct |
32111428 |
T |
|
| Q |
109 |
cttcatcaattgcaagagtgttgaaactcattggatgattgaacttga---catcatgacgccagctaccatattcatttgagtgaatcttgtttgccat |
205 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |||||||| | |||||||| ||| | | ||||||||||||||||||||| || || |
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| T |
32111429 |
cttcatcaattgcaagagtggtgaaactcattggatggttgaacttaataggatcatgacaccaacgattatattcatttgagtgaatcttaagtgtcac |
32111528 |
T |
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| Q |
206 |
gtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaa |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32111529 |
aattccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaa |
32111584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 259
Target Start/End: Complemental strand, 32211545 - 32211292
Alignment:
| Q |
9 |
tacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagtt |
108 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||||||||||| | || | ||||| |||||||||||||||| ||| |||||| |||||| |
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| T |
32211545 |
tacaacaagtaaccgcgttgccaagcttttcctgttcttctataaaactctttggctttgacaaaattgtccaaatcattcataatttcccttcgaagtt |
32211446 |
T |
|
| Q |
109 |
cttcatcaattgcaagagtgttgaaactcattggatgattgaacttgaca---tcatgacgccagctaccatattcatttgagtgaatcttgtttgccat |
205 |
Q |
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|| ||||||||||||||||||||||||||||||||| |||||||||||| ||||| | ||||| |||| |||| ||||| |||||||| | ||||| |
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| T |
32211445 |
ctatatcaattgcaagagtgttgaaactcattggatggttgaacttgacaggttcatggctccagcatccatgttcagttgagagaatcttgatagccat |
32211346 |
T |
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| Q |
206 |
gtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatc |
259 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
32211345 |
gtttccttgtttaatttgtttagctatctccatcacataagggaaatatgaatc |
32211292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 154
Target Start/End: Original strand, 32119347 - 32119496
Alignment:
| Q |
5 |
accgtacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttga |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
32119347 |
accgtacaacaagtaaccgcgtttccaagctttgccggttcttctataaaactctctagcactcacaaatttgtccaaatcattcataatatccctttga |
32119446 |
T |
|
| Q |
105 |
agttcttcatcaattgcaagagtgttgaaactcattggatgattgaactt |
154 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
32119447 |
agcccttcatcaattgcaagagtgttgaaactcattggatggttgaactt |
32119496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 154
Target Start/End: Original strand, 32175001 - 32175145
Alignment:
| Q |
10 |
acaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagttc |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||| || |
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| T |
32175001 |
acaacaagtaaccgcgtttccaagctttccctgttcttctagaaaactctccagccctcacaaatttgtccaaatcgttcataatttccctttgaagatc |
32175100 |
T |
|
| Q |
110 |
ttcatcaattgcaagagtgttgaaactcattggatgattgaactt |
154 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |||||||| |
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| T |
32175101 |
ttcatcaatcgcaagagtgttgaaactcattggatggttgaactt |
32175145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 9 - 154
Target Start/End: Original strand, 32157323 - 32157468
Alignment:
| Q |
9 |
tacaacaagtaaccgcgtttccaagctttccctgttcttctataaaactctctagccctcacaaatttgtccaaatcattcacaatatccctttgaagtt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||||||||||||||||| ||| ||||||||||| | |
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| T |
32157323 |
tacaacaagtaaccgcgtttccaagctttcccggttcttctataaaattcattatccctcacaaatttgtccaaatcattcttaatttccctttgaagct |
32157422 |
T |
|
| Q |
109 |
cttcatcaattgcaagagtgttgaaactcattggatgattgaactt |
154 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
32157423 |
cttcatcaattgcaagagtgttgaaagtcattggatggttgaactt |
32157468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 175 - 261
Target Start/End: Original strand, 32175187 - 32175273
Alignment:
| Q |
175 |
catattcatttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatcaa |
261 |
Q |
| |
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|||||||| |||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32175187 |
catattcaattgagtgaatcttgattgccgtgtttccttgtttaatttgtttagctatctccatcacataaggaaaatatgaatcaa |
32175273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 259
Target Start/End: Original strand, 32119548 - 32119625
Alignment:
| Q |
182 |
atttgagtgaatcttgtttgccatgtctccttgtttaatttgtttagctatctccatcacataaggcaaatatgaatc |
259 |
Q |
| |
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||||||| |||||||| ||||||||| ||||||||| ||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
32119548 |
atttgagcgaatcttgattgccatgtttccttgtttcatttgattagctatctcaatcacataaggcaaatatgaatc |
32119625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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