View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302-Insertion-22 (Length: 69)
Name: NF4302-Insertion-22
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302-Insertion-22 |
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Alignment Details
Target: chr5 (Bit Score: 56; Significance: 6e-24; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-24
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 8677042 - 8677105
Alignment:
| Q |
1 |
ggtaaagggttcaatatcatgccaaaa-aattgaaattcaattgttaaaagttttaaatcaaaa |
63 |
Q |
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| T |
8677042 |
ggtaaagggttcaatatcatgccaaaaaaattgaaattcaattgttaaaagttttaaatcaaaa |
8677105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 8643024 - 8643090
Alignment:
| Q |
1 |
ggtaaagggttcaatatcatgccaaaaaatt-gaaattcaattgttaaaagttttaaatcaaaatga |
66 |
Q |
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| T |
8643024 |
ggtaaagggtccaatatcatgccaaaaaaatcgaaattcaattggtaaaagttttaaatcaaaatga |
8643090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 8639997 - 8640055
Alignment:
| Q |
1 |
ggtaaagggttcaatatcatgccaaaa-aattgaaattcaattgttaaaagttttaaat |
58 |
Q |
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||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| |
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| T |
8639997 |
ggtaaagggttcactatcatgccaaaaaaattgaaattcatttgttaaaagttttaaat |
8640055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 3e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9075767 - 9075709
Alignment:
| Q |
1 |
ggtaaagggttcaatatcatgccaaaaaattgaaattcaattgttaaaagttttaaatc |
59 |
Q |
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|||||||| |||||||| || ||||||||||||||||||| |||||||||||||||||| |
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| T |
9075767 |
ggtaaaggattcaatattataccaaaaaattgaaattcaagtgttaaaagttttaaatc |
9075709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 8533977 - 8534017
Alignment:
| Q |
2 |
gtaaagggttcaatatcatgcca-aaaaattgaaattcaat |
41 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
8533977 |
gtaaagggttcaatatcatgccaccaaaattgaaattcaat |
8534017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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