View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4302-Insertion-24 (Length: 134)
Name: NF4302-Insertion-24
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302-Insertion-24 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 125; Significance: 9e-65; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 42769283 - 42769155
Alignment:
| Q |
6 |
gttaggccctcctatgccagcattgttgaacataatgtcgagttttccatatgtttgtacggttgtgtccacggcattttttatttggctctcatcagtg |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42769283 |
gttaggccctcctatgccagcattgttgaacataatgtcgagttttccatatgtttgtacggttgtgtccacgacattttttatttggctctcatcagtg |
42769184 |
T |
|
| Q |
106 |
acatcacaatgtacatatgtacatgttga |
134 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42769183 |
acatcacaatgtacatatgtacatgttga |
42769155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 6 - 121
Target Start/End: Complemental strand, 42819139 - 42819024
Alignment:
| Q |
6 |
gttaggccctcctatgccagcattgttgaacataatgtcgagttttccatatgtttgtacggttgtgtccacggcattttttatttggctctcatcagtg |
105 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42819139 |
gttaggtccaccaatgccagcattgttgaacataatgtcgagttttccatatgtttgtacggttgtgtccactgcattttttatttggctctcatcagtg |
42819040 |
T |
|
| Q |
106 |
acatcacaatgtacat |
121 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
42819039 |
acatcacaatgtacat |
42819024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 80 - 134
Target Start/End: Complemental strand, 42811148 - 42811094
Alignment:
| Q |
80 |
cattttttatttggctctcatcagtgacatcacaatgtacatatgtacatgttga |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42811148 |
cattttttatttggctctcatcagtgacatcacaatgtacatatgtacatgttga |
42811094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 56
Target Start/End: Complemental strand, 26564557 - 26564522
Alignment:
| Q |
21 |
gccagcattgttgaacataatgtcgagttttccata |
56 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
26564557 |
gccagcattgttgaacattatgtcaagttttccata |
26564522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 1e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 6 - 134
Target Start/End: Complemental strand, 33053940 - 33053812
Alignment:
| Q |
6 |
gttaggccctcctatgccagcattgttgaacataatgtcgagttttccatatgtttgtacggttgtgtccacggcattttttatttggctctcatcagtg |
105 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33053940 |
gttaggtccaccaatgccagcattgttgaacataatgttgagttttccatatgtttgtacggttgtgtccacggcattttttatttggctctcatcagtg |
33053841 |
T |
|
| Q |
106 |
acatcacaatgtacatatgtacatgttga |
134 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
33053840 |
acatcacaatgtacatatgtacatgttga |
33053812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University