View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302-Insertion-29 (Length: 132)
Name: NF4302-Insertion-29
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302-Insertion-29 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 5e-54; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 5e-54
Query Start/End: Original strand, 6 - 132
Target Start/End: Original strand, 4007639 - 4007765
Alignment:
| Q |
6 |
ctctggtctttctctaagctttacattcgtatctgtccttgctgtaaccttgattttaaaccttgtctaattatttgctactctagttaggtaccgagaa |
105 |
Q |
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| T |
4007639 |
ctctggtctttctctaagctttacattcgtatctgtccttgctgtaaccttgattttaaaccttgtatgattctttgctactctagttaggtaccgagaa |
4007738 |
T |
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| Q |
106 |
cattgttggttgtgtatcatgcacaca |
132 |
Q |
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| T |
4007739 |
catcgttggtcgtgtatcatgcacaca |
4007765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 1e-51
Query Start/End: Original strand, 10 - 132
Target Start/End: Original strand, 3998652 - 3998774
Alignment:
| Q |
10 |
ggtctttctctaagctttacattcgtatctgtccttgctgtaaccttgattttaaaccttgtctaattatttgctactctagttaggtaccgagaacatt |
109 |
Q |
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| T |
3998652 |
ggtctttctctaagctttacattcgtatctgtccttgctgtaaccttaattttaaaccttgtatgattctttgctacactagttaggtaccgagaacatt |
3998751 |
T |
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| Q |
110 |
gttggttgtgtatcatgcacaca |
132 |
Q |
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| T |
3998752 |
gttggttgtgtatcatgcacaca |
3998774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 3815439 - 3815523
Alignment:
| Q |
44 |
ttgctgtaaccttgattttaaaccttgtctaattatttgctactctagttaggtaccgagaacattgttggttgtgtatcatgca |
128 |
Q |
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| T |
3815439 |
ttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggtacccagaacatcgttggtcctgtatcatgca |
3815523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 37 - 132
Target Start/End: Original strand, 4022828 - 4022923
Alignment:
| Q |
37 |
tctgtccttgctgtaaccttgattttaaaccttgtctaattatttgctactctagttaggtaccgagaacattgttggttgtgtatcatgcacaca |
132 |
Q |
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| T |
4022828 |
tctgtccttgccgtaaccttgattttaaaccttctcttattgtttgctatgctagttaggtagtgagaaaatggttggtcgtatatcatgcacaca |
4022923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 39 - 128
Target Start/End: Complemental strand, 3957866 - 3957777
Alignment:
| Q |
39 |
tgtccttgctgtaaccttgattttaaaccttgtctaattatttgctactctagttaggtaccgagaacattgttggttgtgtatcatgca |
128 |
Q |
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| T |
3957866 |
tgtccttgctgtaaccttgattttaaaccttgtctgcttttttgctatgctagttaggtagcgtgaacatggtgggtcgtatatcatgca |
3957777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 3935767 - 3935705
Alignment:
| Q |
42 |
ccttgctgtaaccttgattttaaaccttgtctaattatttgctactctagttaggtaccgaga |
104 |
Q |
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| T |
3935767 |
ccttgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggtactgaga |
3935705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 132
Target Start/End: Complemental strand, 3922410 - 3922317
Alignment:
| Q |
39 |
tgtccttgctgtaaccttgattttaaaccttgtctaattatttgctactctagttaggtaccgagaacattgttggttgtgtatcatgcacaca |
132 |
Q |
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| T |
3922410 |
tgtccatgctgtaaccttgattttaaagcttgtctgattttttgctattctagttaggtgctgagaacaaggttggtcgtaaatcatacacaca |
3922317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 3999875 - 3999968
Alignment:
| Q |
39 |
tgtccttgctgtaaccttgattttaaaccttgtctaattatttgctactctagttaggtaccgagaacattgttggttgtgtatcatgcacaca |
132 |
Q |
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| T |
3999875 |
tgtccttgctgcaaccttgattttgaaccttgtatgatttttcgctattctagttaggtactgagaaaatggtgggtcgtatatcatacacaca |
3999968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 132
Target Start/End: Original strand, 3984754 - 3984847
Alignment:
| Q |
39 |
tgtccttgctgtaaccttgattttaaaccttgtctaattatttgctactctagttaggtaccgagaacattgttggttgtgtatcatgcacaca |
132 |
Q |
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| T |
3984754 |
tgtccttgctgtaaccttgattttaacctgtgtctgacttttggctatgctggttaggtagtgagaacatggttggtcgtatatcatgcacaca |
3984847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 3807848 - 3807919
Alignment:
| Q |
42 |
ccttgctgtaaccttgattttaaaccttgtctaattatttgctactctagttaggtaccgagaacattgttg |
113 |
Q |
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| T |
3807848 |
ccttactgtaaccttgattttaaaccttgcctgattttttgcttttttagttaagaattgagaacattgttg |
3807919 |
T |
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