View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302-Insertion-40 (Length: 239)
Name: NF4302-Insertion-40
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302-Insertion-40 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 22071752 - 22071990
Alignment:
| Q |
1 |
tcaacatcacctactatgaaagcagcaacttcggagaccgtaggttcattgtaaatcctaccatcagatttcctttccgatattagtcttaatttcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||| |
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| T |
22071752 |
tcaacatcacctactatgaaagcagcaacttcggagaccgtaggttcattgtaaatcctatcatcagatttactttccgatataagtcttaatttcaaat |
22071851 |
T |
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| Q |
101 |
catgcatgtgtcctccctttaagatatcacgtgccatcctgaaatactttgcatgaacattatgctcatccaacattttgcacaatcgtacaataatgtc |
200 |
Q |
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| T |
22071852 |
cattcatgtgtcctccctttaagatatcacgtgccatcctgaaagactttgcatgaacattatgctcatccaacattttgcacaatcgtacaacaatgtc |
22071951 |
T |
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| Q |
201 |
ttcagatatatttttggtgttcctgttgaaaaaagcaaa |
239 |
Q |
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| T |
22071952 |
ttcagatatatttttggtattcctgttgaaaaaagcaaa |
22071990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 117832 - 118053
Alignment:
| Q |
1 |
tcaacatcacctactatgaaagcagcaacttcggagaccgtaggttcattgtaaatcctaccatcagatttcctttccgatattagtcttaatttcaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||| || || || ||||||||||||||||| ||||||||||||||||| ||||| ||| | | |||||||| |
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| T |
117832 |
tcaacatcacctactatgaaagcagcaacttctgatactgtcggttcattgtaaatccttccatcagatttcctttctgatataagtttgattttcaaat |
117931 |
T |
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| Q |
101 |
catgcatgtgtcctccctttaagatatcacgtgccatcctgaaatactttgcatgaacattatgctcatccaacattttgcacaatcgtacaataatgtc |
200 |
Q |
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| T |
117932 |
catgaatgtgtcctccttttaaaatatcacgtgccatcctgaatgactttgcatgaacattaaattcatctagcattttgcacaattgtacaacaatgtc |
118031 |
T |
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| Q |
201 |
ttcagatatatttttggtgttc |
222 |
Q |
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| T |
118032 |
ttgagaaatatttttggtgttc |
118053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26224021 - 26223955
Alignment:
| Q |
1 |
tcaacatcacctactatgaaagcagcaacttcggagaccgtaggttcattgtaaatcctaccatcag |
67 |
Q |
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| T |
26224021 |
tcaacatcacctactatcaaagctgctacttcggagacagtaggttgattataaatccttccatcag |
26223955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33543585 - 33543519
Alignment:
| Q |
1 |
tcaacatcacctactatgaaagcagcaacttcggagaccgtaggttcattgtaaatcctaccatcag |
67 |
Q |
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||||||||||||||||| ||||| || ||||| ||||| ||||||| ||| |||||||| ||||||| |
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| T |
33543585 |
tcaacatcacctactatcaaagctgctacttcagagacagtaggttgattataaatccttccatcag |
33543519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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