View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4302-Insertion-45 (Length: 57)

Name: NF4302-Insertion-45
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4302-Insertion-45
NF4302-Insertion-45
[»] chr5 (1 HSPs)
chr5 (1-57)||(11727334-11727390)
[»] chr8 (1 HSPs)
chr8 (1-57)||(33948369-33948425)
[»] chr1 (2 HSPs)
chr1 (1-57)||(31704723-31704779)
chr1 (13-57)||(47680291-47680335)
[»] chr3 (1 HSPs)
chr3 (3-57)||(26453485-26453537)


Alignment Details
Target: chr5 (Bit Score: 53; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-22
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 11727390 - 11727334
Alignment:
Q  1 tgttcttttctagtgttcttagcaatgaagaacatatttttatgttatatgcattgg 57  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11727390 tgttcttttctagtgttcttagcaatcaagaacatatttttatgttatatgcattgg 11727334  T

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Target: chr8 (Bit Score: 33; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33948369 - 33948425
Alignment:
Q  1 tgttcttttctagtgttcttagcaatgaagaacatatttttatgttatatgcattgg 57  Q
    ||||||||  |||||||||||||||  ||||||||||||||||||| |||| |||||    
T  33948369 tgttctttcttagtgttcttagcaaacaagaacatatttttatgttctatgtattgg 33948425  T

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Target: chr1 (Bit Score: 33; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31704723 - 31704779
Alignment:
Q  1 tgttcttttctagtgttcttagcaatgaagaacatatttttatgttatatgcattgg 57  Q
    ||||||||  |||| ||||||||||  ||||||||||||||||||| ||||||||||    
T  31704723 tgttctttcttagtattcttagcaaacaagaacatatttttatgttgtatgcattgg 31704779  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 47680291 - 47680335
Alignment:
Q  13 gtgttcttagcaatgaagaacatatttttatgttatatgcattgg 57  Q
    |||||||||||||  |||||||||||||||| || ||||||||||    
T  47680291 gtgttcttagcaaacaagaacatatttttatattttatgcattgg 47680335  T

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Target: chr3 (Bit Score: 28; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 26453537 - 26453485
Alignment:
Q  3 ttcttttctagtgttcttagcaatgaagaacatatttttatgttatatgcattgg 57  Q
    |||||| ||||| ||||||||||  ||||||||||||||||||| |||| |||||    
T  26453537 ttctttcctagttttcttagcaa--aagaacatatttttatgttttatgtattgg 26453485  T

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