View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302-Insertion-48 (Length: 196)
Name: NF4302-Insertion-48
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302-Insertion-48 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 7e-88; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 7e-88
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 5921505 - 5921692
Alignment:
| Q |
9 |
cagtgaggtatcgtccgtgtctagggtcagcagcacacatcatgttcttagaatcccacatttgctgtgtgagctctggtacactcaaagcccggtactg |
108 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
5921505 |
cagtgaggtatcgtccgtgtctagggtcggcagcacacatcatattcttggaatcccacatttgctgagtgagctctggtacactcaaagcacggtactg |
5921604 |
T |
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| Q |
109 |
ctgagaacctcttgaagtcagaggtgcaaaacccaacatgaaaaagtgaagacgagggaatggaatgagattcacagcaagcttcctc |
196 |
Q |
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| T |
5921605 |
ctgagaacctcttgaagtcaaaggtgcaaaacccaacatgaaaaagtgaagacgagggaatggaatgagattcacagcaagcttcctc |
5921692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 5934965 - 5935151
Alignment:
| Q |
9 |
cagtgaggtatcgtccgtgtctagggtcagcagcacacatcatgttcttagaatcccacatttgctgtgtgagctctggtacactcaaagcccggtactg |
108 |
Q |
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| T |
5934965 |
cagtgaggtaccgtccgtgtctagggtcagcagcacacatcatgttcttggaatcccacatttgctgtgtgatctctggaacactcaaagccctgtactg |
5935064 |
T |
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| Q |
109 |
ctgagaacctcttgaagtcagaggtgcaaaacccaacatgaaaaagtgaagacgagggaatggaatgagattcacagcaagcttcct |
195 |
Q |
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| T |
5935065 |
ctgagaacctcttgaagtcaaaggtgcaaaccctaacatgaaaaagtggaggcgagggaatggaaccagattcactgcaagcttcct |
5935151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 195
Target Start/End: Complemental strand, 5532528 - 5532342
Alignment:
| Q |
9 |
cagtgaggtatcgtccgtgtctagggtcagcagcacacatcatgttcttagaatcccacatttgctgtgtgagctctggtacactcaaagcccggtactg |
108 |
Q |
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| T |
5532528 |
cagtgaggtatcgcccatgcctagggtcagcagcacacatcatgttcttggcatcccacatttgttgagtgagctcagggacacttagagtcctgtactg |
5532429 |
T |
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| Q |
109 |
ctgagaacctcttgaagtcagaggtgcaaaacccaacatgaaaaagtgaagacgagggaatggaatgagattcacagcaagcttcct |
195 |
Q |
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| T |
5532428 |
ctgggagccacgggaagtcaaaggagcaaatcccaccatgaaaaagtgaagacgcgggaatggaatgagattcacagcaagcttcct |
5532342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 5e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 34841597 - 34841423
Alignment:
| Q |
9 |
cagtgaggtatcgtccgtgtctagggtcagcagcacacatcatgttcttagaatcccacatttgctgtgtgagctctggtacactcaaagcccggtactg |
108 |
Q |
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| T |
34841597 |
cagtgaggtatcgaccatgcctaggatcagcagcacacatcatgtttttggaatcccacatctgctgggtgagttctggaacagtcaatgcacggtattg |
34841498 |
T |
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| Q |
109 |
ctgagaacctcttgaagtcagaggtgcaaaacccaacatgaaaaagtgaagacgagggaatggaatgagattcac |
183 |
Q |
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| T |
34841497 |
ctgagagccacgggatgtaagaggagcaaaaccaaccatgaagaagtgcaggcgagggaatgggatgagattcac |
34841423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 35 - 192
Target Start/End: Original strand, 11732171 - 11732328
Alignment:
| Q |
35 |
tcagcagcacacatcatgttcttagaatcccacatttgctgtgtgagctctggtacactcaaagcccggtactgctgagaacctcttgaagtcagaggtg |
134 |
Q |
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| T |
11732171 |
tcagcagcacacatcatgttctttgaatcccacatctgctgagtcaattctggtacagtcaaagcacgatattgctgggatcctcttgatgtcaagggtg |
11732270 |
T |
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| Q |
135 |
caaaacccaacatgaaaaagtgaagacgagggaatggaatgagattcacagcaagctt |
192 |
Q |
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| T |
11732271 |
caaacccaaccatgaagaaatggagccgagggaatgggataagattgacagcaagctt |
11732328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 180
Target Start/End: Original strand, 45452733 - 45452878
Alignment:
| Q |
35 |
tcagcagcacacatcatgttcttagaatcccacatttgctgtgtgagctctggtacactcaaagcccggtactgctgagaacctcttgaagtcagaggtg |
134 |
Q |
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| T |
45452733 |
tcagcggcgcacatcatgttctttgaatcccacatctgctgggtcagctcaggtacagtaagagctctgtactgctgtgaaccacgagaagtgagtgggg |
45452832 |
T |
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| Q |
135 |
caaaacccaacatgaaaaagtgaagacgagggaatggaatgagatt |
180 |
Q |
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| T |
45452833 |
caaatcccaccatgaagaaatgcaaacgagggaaaggaatgagatt |
45452878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 195
Target Start/End: Original strand, 53146396 - 53146487
Alignment:
| Q |
104 |
tactgctgagaacctcttgaagtcagaggtgcaaaacccaacatgaaaaagtgaagacgagggaatggaatgagattcacagcaagcttcct |
195 |
Q |
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| T |
53146396 |
tactgctgagacccacgagaagtgagaggtgcaaacccaaccataaaaaagtgaagacgtgggaatgggatcagattgacagccagcttcct |
53146487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 53146308 - 53146364
Alignment:
| Q |
16 |
gtatcgtccgtgtctagggtcagcagcacacatcatgttcttagaatcccacatttg |
72 |
Q |
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| T |
53146308 |
gtatcgaccatgtcgagggtcagcagcacacatcatattcttggcgtcccacatttg |
53146364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 40916590 - 40916651
Alignment:
| Q |
26 |
tgtctagggtcagcagcacacatcatgttcttagaatcccacatttgctgtgtgagctctgg |
87 |
Q |
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| T |
40916590 |
tgtcttggatcagcagcacacatcatgtttcttgcatcccacatttgctgtgtgagttctgg |
40916651 |
T |
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