View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302-Insertion-49 (Length: 213)
Name: NF4302-Insertion-49
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302-Insertion-49 |
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Alignment Details
Target: chr2 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 41460415 - 41460611
Alignment:
| Q |
1 |
gaaagaacagttgaaattgatttcgaatatgatacaaattttggatataaaatcatatgaaactgtaatcataggccccccaatttcattagtacnctct |
100 |
Q |
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| T |
41460415 |
gaaagaacagttgaaattgatttcgaatatgatacaaattttggatataaaatcatatgaaactggaatcataggcccc-caatttcattagtacactct |
41460513 |
T |
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| Q |
101 |
ttttgggtcacactcttagacaaatgctaatcaaattgtcaaaccatctttaagggggaaaaataatgaggaaccgaaggagtattgttccttagaaat |
199 |
Q |
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| T |
41460514 |
ttttgggtcacactcttagacaaatgctaatcaaattgtcaaaccatctttaa-ggggaaaaataatgcggaactgaaggagtattgttctttagaaat |
41460611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 137118 - 137181
Alignment:
| Q |
1 |
gaaagaacagttgaaattgatttcgaatatgatacaaattttggatataaaatcatatgaaact |
64 |
Q |
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| T |
137118 |
gaaagaacagttgaaattgatatggaatatgatacaaattttggatataaaatcatatgaaact |
137181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35185264 - 35185327
Alignment:
| Q |
1 |
gaaagaacagttgaaattgatttcgaatatgatacaaattttggatataaaatcatatgaaact |
64 |
Q |
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| T |
35185264 |
gaaagaacagttgaaattgatatggaatataatacaaattttggatataaaatcatatgaaact |
35185327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 1393865 - 1393928
Alignment:
| Q |
1 |
gaaagaacagttgaaattgatttcgaatatgatacaaattttggatataaaatcatatgaaact |
64 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||| |
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| T |
1393865 |
gaaagaacagttgaaattgatatggaatatgatacaaattttggatatgaaatcatatgaaact |
1393928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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