View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302-Insertion-54 (Length: 202)
Name: NF4302-Insertion-54
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302-Insertion-54 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 8299961 - 8299760
Alignment:
| Q |
1 |
gacgttaggttaggaaattgaatatttaattgaaaattgatttttcctatgccttgtatagatattatttgaattgtttttaggtagntatctaggatta |
100 |
Q |
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| T |
8299961 |
gacgttaggttaggaaattgaatatttaattgaaaattgattttgcatatgccttgtatagatattatttgaatggtttttaggtagttatctaggatta |
8299862 |
T |
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| Q |
101 |
ggattgattgtactanataatatgaaaatggtaactttaatattgatactgattatgtattgttttccttccgttgtctttcatttgcaggtagatagat |
200 |
Q |
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| T |
8299861 |
gaattgaatgtactatataatatgaaaatggtaactttaatattgatactgattatgtattgttttccttccgttgtctttcatttgcaggtagatagat |
8299762 |
T |
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| Q |
201 |
at |
202 |
Q |
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| T |
8299761 |
at |
8299760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 48 - 202
Target Start/End: Complemental strand, 8309391 - 8309231
Alignment:
| Q |
48 |
tatgccttgtatagatattatttgaattgtttttaggtagntatctaggattaggattgattgtactanataatatgaaaatggtaact------ttaat |
141 |
Q |
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| T |
8309391 |
tatgtcttgtatagatattacttgaatggtttttatgtagctatctaggaccaggattgattgtactatataatatgaaaaaggtaactttgttattaat |
8309292 |
T |
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| Q |
142 |
attgatactgattatgtattgttttccttccgttgtctttcatttgcaggtagatagatat |
202 |
Q |
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| T |
8309291 |
attcatattgattatatattaatttgcttccgttttctttcatttgcaggaagatagatat |
8309231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 44
Target Start/End: Complemental strand, 8309464 - 8309425
Alignment:
| Q |
5 |
ttaggttaggaaattgaatatttaattgaaaattgatttt |
44 |
Q |
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| T |
8309464 |
ttaggttaggaaattgaatatttaattgaaaattgatttt |
8309425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 21120775 - 21120882
Alignment:
| Q |
66 |
tatttgaattgtttttaggtagntatctaggattaggattgattgtactanataatatgaaaatggtaactttaatattgatactgattatgtattgttt |
165 |
Q |
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| T |
21120775 |
tatttgaagggtttttatgcagctatctagaattaggattgattctacta--taatatgaaaatggtaactttgttattaatattgattttgtattgatt |
21120872 |
T |
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| Q |
166 |
tccttccgtt |
175 |
Q |
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| T |
21120873 |
tcctttcgtt |
21120882 |
T |
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