View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4302-Insertion-57 (Length: 177)
Name: NF4302-Insertion-57
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302-Insertion-57 |
 | |
|
| [»] chr7 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 1e-76; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 1e-76
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 35766605 - 35766429
Alignment:
| Q |
1 |
gttttgtgctacggttggctcagtttcgtggcagaaggtaatagaaggcaagaggttttggtttctgcatccaaatgtggtcaactgggacgactctgct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
35766605 |
gttttgtgctacggttggctcagtttcgtggaagaaggtaatagaaggcaagaggtttatgtttctgcatccaacagtgatcaactgggacgactctgct |
35766506 |
T |
|
| Q |
101 |
gtcaaagaggcattcgacaatgccaagaacaggttttgggctgatatcaacggctttccctgcgaaataccattgcc |
177 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35766505 |
gtcaaagaggcattcgacaatgctaagaacaggttttgggctgatatcaacggctttccctgcgacataccattgcc |
35766429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 9e-44
Query Start/End: Original strand, 12 - 177
Target Start/End: Complemental strand, 35761111 - 35760946
Alignment:
| Q |
12 |
cggttggctcagtttcgtggcagaaggtaatagaaggcaagaggttttggtttctgcatccaaatgtggtcaactgggacgactctgctgtcaaagaggc |
111 |
Q |
| |
|
|||||||||||||| | |||| ||||||||||||||||||| || | || ||||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35761111 |
cggttggctcagttccatggcgaaaggtaatagaaggcaagaagtatatgtatctgcatcccaatgtggtaaactgggacgactctgctgtcaaagaggc |
35761012 |
T |
|
| Q |
112 |
attcgacaatgccaagaacaggttttgggctgatatcaacggctttccctgcgaaataccattgcc |
177 |
Q |
| |
|
||| |||||||| || ||||| ||||||||||| ||||||| ||||||||||| ||||||||||| |
|
|
| T |
35761011 |
atttgacaatgcaaaaaacagattttgggctgagatcaacgaatttccctgcgacataccattgcc |
35760946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 35799555 - 35799379
Alignment:
| Q |
1 |
gttttgtgctacggttggctcagtttcgtggcagaaggtaatagaaggcaagaggttttggtttctgcatccaaatgtggtcaactgggacgactctgct |
100 |
Q |
| |
|
|||||||||| |||| ||||||||| | |||| ||| ||||||||| |||||||| || | ||||||| || ||||| |||||||||||||||||| |
|
|
| T |
35799555 |
gttttgtgcttcggtgggctcagttccatggcgaaagctaatagaagacaagaggtacatgtatatgcatcccaaagtggtaaactgggacgactctgct |
35799456 |
T |
|
| Q |
101 |
gtcaaagaggcattcgacaatgccaagaacaggttttgggctgatatcaacggctttccctgcgaaataccattgcc |
177 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||||||||| ||||||||| ||||||| || ||||||||||| |
|
|
| T |
35799455 |
gtcaaagaggcattcgacaatgcaaaaaacaggtattgggctgagatcaacggcattccctgggacataccattgcc |
35799379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 35755964 - 35755788
Alignment:
| Q |
1 |
gttttgtgctacggttggctcagtttcgtggcagaaggtaatagaaggcaagaggttttggtttctgcatccaaatgtggtcaactgggacgactctgct |
100 |
Q |
| |
|
|||||||||| || |||| ||||| | |||| ||| ||||||||| |||||||| | || ||| ||||| |||||||| |||||||| ||||||||| |
|
|
| T |
35755964 |
gttttgtgcttcgattggtgcagttccatggcgaaagctaatagaagtcaagaggtatatgtctctacatcccaatgtggtaaactgggatgactctgct |
35755865 |
T |
|
| Q |
101 |
gtcaaagaggcattcgacaatgccaagaacaggttttgggctgatatcaacggctttccctgcgaaataccattgcc |
177 |
Q |
| |
|
|| |||||||||||| ||||||| || ||||||||||||||||| ||||||||| ||||||| || ||||||||||| |
|
|
| T |
35755864 |
gtaaaagaggcattcaacaatgcaaaaaacaggttttgggctgagatcaacggccttccctgtgacataccattgcc |
35755788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 35 - 177
Target Start/End: Complemental strand, 35786026 - 35785884
Alignment:
| Q |
35 |
aaggtaatagaaggcaagaggttttggtttctgcatccaaatgtggtcaactgggacgactctgctgtcaaagaggcattcgacaatgccaagaacaggt |
134 |
Q |
| |
|
||||||||||||||||| | || | || ||| || || || ||||| |||||| ||||||||||||||||||||||||| |||||||| || ||||||| |
|
|
| T |
35786026 |
aaggtaatagaaggcaataagtatatgtgtcttcaccccaaagtggtaaactggaacgactctgctgtcaaagaggcatttgacaatgcaaaaaacaggt |
35785927 |
T |
|
| Q |
135 |
tttgggctgatatcaacggctttccctgcgaaataccattgcc |
177 |
Q |
| |
|
|||||||||| ||||||||| |||||||| | ||||||||||| |
|
|
| T |
35785926 |
tttgggctgagatcaacggccttccctgcaacataccattgcc |
35785884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 35789912 - 35789740
Alignment:
| Q |
1 |
gttttgtgctacggttggctcagtttcgtggcagaaggtaatagaaggcaagaggttttggtttctgcatccaaatgtggtcaactgggacgactctgct |
100 |
Q |
| |
|
|||||||||| || |||||||||| | |||| ||| ||||||||| ||||| | | || ||| ||||| |||||||| ||||||||||| ||||| |
|
|
| T |
35789912 |
gttttgtgcttcgattggctcagtaccatggcgaaagataatagaagtcaagaaatatatgtgtctacatcccaatgtggtaaactgggacgattctgcc |
35789813 |
T |
|
| Q |
101 |
gtcaaagaggcattcgacaatgccaagaacaggttttgggctgatatcaacggctttccctgcgaaataccat |
173 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||| |||||||| ||||||| | |||||||||| ||||||| |
|
|
| T |
35789812 |
gtcaaagaggcattcaacaatgcaaaaaacaggttctgggctgagatcaacgacattccctgcgacataccat |
35789740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University