View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302-Insertion-59 (Length: 262)
Name: NF4302-Insertion-59
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302-Insertion-59 |
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| [»] chr5 (2 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 75 - 262
Target Start/End: Complemental strand, 41987679 - 41987496
Alignment:
| Q |
75 |
aaaatttgtcacttatatcgtgaagcaaatacttgtgttcatgcttaatttagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
174 |
Q |
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| T |
41987679 |
aaaatttgtcacttatatcgtgaagcaaatacttatgttcatgctt----tagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
41987584 |
T |
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| Q |
175 |
acatgtttgttacagcttaagcaaatgctcgctggtgttattagggagctttattaactcctacgtaattgtttctagtttaggctta |
262 |
Q |
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| T |
41987583 |
acatgtttgttacagcttaagcaaatgctcgctggtgttattagggagctttattaactcctacgtaattgtttctagtttaggctta |
41987496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 41987782 - 41987723
Alignment:
| Q |
5 |
agcaaatgcaattaatattatgactattacaaacagatttggccatcacaaataaaagtg |
64 |
Q |
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| T |
41987782 |
agcaaatgcaattagtattacgactattacaaacagatttggccctcacaaataaaagtg |
41987723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 75 - 262
Target Start/End: Original strand, 1220834 - 1221017
Alignment:
| Q |
75 |
aaaatttgtcacttatatcgtgaagcaaatacttgtgttcatgcttaatttagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
174 |
Q |
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| T |
1220834 |
aaaatttgtcacttatatggtgaagcaaatacttgtgttcatgctt----tagctaatagggaatgtgattctcataatgtttgtgcagtttatgatgat |
1220929 |
T |
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| Q |
175 |
acatgtttgttacagcttaagcaaatgctcgctggtgttattagggagctttattaactcctacgtaattgtttctagtttaggctta |
262 |
Q |
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| T |
1220930 |
acatgtttgttacagcttaagcaaatgctcgctggtgttattagggagctttattaactcctacgtaattgtttctagtttaggctta |
1221017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 1220731 - 1220790
Alignment:
| Q |
5 |
agcaaatgcaattaatattatgactattacaaacagatttggccatcacaaataaaagtg |
64 |
Q |
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| T |
1220731 |
agcaaatgcaattagtattacgactattacaaacaaatttggccatcacaaataaaagtg |
1220790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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