View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302_high_3 (Length: 453)
Name: NF4302_high_3
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Original strand, 42769279 - 42769703
Alignment:
| Q |
19 |
ctaacaactctcggatcattgacaacgataaagcagattttgaacgtgttttaagcatcaacgtgacaggtgttttcctcggcatcaagcacgcagcaca |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769279 |
ctaacaactctcggatcattgacaacgataaagcagattttgaacgtgttttaagcatcaacgtgacaggtgttttcctcggcatcaagcacgcagcaca |
42769378 |
T |
|
| Q |
119 |
agccatgatcccagctcgcaccggtagcatcataagtacttctagcataagctcttatgttggtggtgctgcctcacatgcttattgtagtgcaaagcat |
218 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769379 |
agccatgatcccagctcgcaccggtagcataataagtactactagcataagctcttatgttggtggtgctgcctcacatgcttattgtagtgcaaagcat |
42769478 |
T |
|
| Q |
219 |
gctgtggttggtttaactaaaaatgcagcagttgaacttggacaatttgggattagagttaattgtgtgtctccttatgctcttgcaactcctttagcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42769479 |
gctgtggttggtttaactaaaaatgcagcagttgaacttggaaaatttgggattagagttaattgtgtgtctccttatgctcttgcaactcctttagcaa |
42769578 |
T |
|
| Q |
319 |
cacaatttgttggatgtaatgatggtgagcttgaaactaccatgaacacgttggctaatcttaagggtgtgactttgaaaactgatgatgtggcaaatgc |
418 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
42769579 |
cacaatttgttggatgtaatgatggtgagcttgaaactaccatgaacacgttggctaatcttaagggtgtgattttgaaaactgatgatgtggtaaatgc |
42769678 |
T |
|
| Q |
419 |
agcactttattttgctagtgatgat |
443 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
42769679 |
agcactttattttgctagtgatgat |
42769703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 19 - 439
Target Start/End: Original strand, 42819135 - 42819555
Alignment:
| Q |
19 |
ctaacaactctcggatcattgacaacgataaagcagattttgaacgtgttttaagcatcaacgtgacaggtgttttcctcggcatcaagcacgcagcaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42819135 |
ctaacaactctcggatcattgacaacgataaagaagattttgaacgtgtattaagcgtcaacgtgacaggtgttttcctcggcatcaagcacgcagcaca |
42819234 |
T |
|
| Q |
119 |
agccatgatcccagctcgcaccggtagcatcataagtacttctagcataagctcttatgttggtggtgctgcctcacatgcttattgtagtgcaaagcat |
218 |
Q |
| |
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||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42819235 |
agccatgatcccaactcgcaccggtagcattataagtacttctagcataagctcttatgttggtggtgctgcctcacatgcttattgtagtgcaaagcat |
42819334 |
T |
|
| Q |
219 |
gctgtggttggtttaactaaaaatgcagcagttgaacttggacaatttgggattagagttaattgtgtgtctccttatgctcttgcaactcctttagcaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42819335 |
gctgtggttggtttaactaaaaatgcagcagttgaacttggacaatttgggattagagttaattgtgtgtctccttatgctcttgcaactcctttagcaa |
42819434 |
T |
|
| Q |
319 |
cacaatttgttggatgtaatgatggtgagcttgaaactaccatgaacacgttggctaatcttaagggtgtgactttgaaaactgatgatgtggcaaatgc |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42819435 |
cacaatttgttggatgtaatgatggtgagcttgaaactaccatgaacatgttggctaaccttaagggtgtaactttgaaaactgatgatgtggcaaatgc |
42819534 |
T |
|
| Q |
419 |
agcactttattttgctagtga |
439 |
Q |
| |
|
|| |||||||||||||||||| |
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|
| T |
42819535 |
agtactttattttgctagtga |
42819555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 33053936 - 33054207
Alignment:
| Q |
19 |
ctaacaactctcggatcattgacaacgataaagcagattttgaacgtgttttaagcatcaacgtgacaggtgttttcctcggcatcaagcacgcagcaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33053936 |
ctaacaactctcggatcattgacaacgataaagcagattttgaacgtgtattaagcgtcaacgtgacaggtgttttcctcggcatcaagcacgcagcaca |
33054035 |
T |
|
| Q |
119 |
agccatgatcccagctcgcaccggtagcatcataagtacttctagcataagctcttatgttggtggtgctgcctcacatgcttattgtagtgcaaagcat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33054036 |
agccatgatcccagctcgcaccggtagcattataagtacttctagcataagctcttatgttggtggtgctgcctcacatgcttattgtagtgcaaagcat |
33054135 |
T |
|
| Q |
219 |
gctgtggttggtttaactaaaaatgcagcagttgaacttggacaatttgggattagagttaattgtgtgtct |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33054136 |
gctgtggttggtttaactaaaaatgcagcagttgaacttggacaatttgggattagagttaattgtgtgtct |
33054207 |
T |
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