View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302_low_1 (Length: 539)
Name: NF4302_low_1
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 149 - 521
Target Start/End: Complemental strand, 30369124 - 30368757
Alignment:
| Q |
149 |
gaatgttatgttgtacaacaccaactaataactaaacatcaacacatactattagtcctttggggcgaatcaaggagggttcggcacacacatctcttct |
248 |
Q |
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| T |
30369124 |
gaatgttatgttgtacaacaccaactaataactaaacatcaacacatactattagtcctttggggcgaatcaaggatggttcggcacacacatctcttct |
30369025 |
T |
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| Q |
249 |
ttgttggtcaaatttgaattcacagtttataatctcattccaacatattttcatatttgaatttcaaattgaaatgcaaatacaatcagggatggatttt |
348 |
Q |
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| T |
30369024 |
ttgttggtcaaatttgaattcacagtttataatctcattccaacatattt--------gaatttcaaattgaaatgcaaatacaatcagggatggatttt |
30368933 |
T |
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| Q |
349 |
accagttcggcatccgggtcaattttaaaacattggtgcaaacaataatttaaaagagatcaacattgattgatttgaattcctttgtttcattgcagaa |
448 |
Q |
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| T |
30368932 |
gccagttcggcatccgggtcaattttaaaacattggtgcaaacaataatttaaaagagatcaacattgattgatttgaattcctttgtttcattgcagaa |
30368833 |
T |
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| Q |
449 |
acaatcagaaatatcataacnnnnnnnnnaccaaagaaatatcataac---tatgccaagaggattaacagttgct |
521 |
Q |
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| T |
30368832 |
acaatcagaaatatcataactttttttttagcaaagaaatatcataacttatatgcaaagaggattaacagttgct |
30368757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 319
Target Start/End: Complemental strand, 31406220 - 31406171
Alignment:
| Q |
270 |
acagtttataatctcattccaacatattttcatatttgaatttcaaattg |
319 |
Q |
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| T |
31406220 |
acagcttataatcacattccaacatactttcatatttgaatttcaaattg |
31406171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 31375443 - 31375478
Alignment:
| Q |
152 |
tgttatgttgtacaacaccaactaataactaaacat |
187 |
Q |
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| T |
31375443 |
tgttatgttgtacaacaccaactaataaccaaacat |
31375478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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