View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302_low_12 (Length: 282)
Name: NF4302_low_12
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 255
Target Start/End: Original strand, 2550446 - 2550693
Alignment:
| Q |
8 |
aagcataggtaaggatacaattatgaatccataattagatatcaaatagaaccaatgtaaacaagcaagaaggagaacaaactcacaaacacatatagat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2550446 |
aagcataggtaaggatacaattatgaatccataattagatatcaaatagaaccaatgtaaacaagcaagaaggagaacaaactcacgaacacatatagat |
2550545 |
T |
|
| Q |
108 |
taaaccttc-aacatttcaatactttacatacaaggtatcctatacaattcctaaagaagtttaaaatgaaaagtccacgcaataaaaatcaaacaagtt |
206 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2550546 |
taaaccttccaacatttcaatactttacatacaaggtatcctatacaattcctaatgaagtttaaaatgaaaagtctacgcaataaaaatcaaacaagtt |
2550645 |
T |
|
| Q |
207 |
gatgacaccatgaaaggtaaacataacacttttaaatccaaataatctt |
255 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2550646 |
gatgacaccatgaaaggtaaacataacactttt-aatccaaataatctt |
2550693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 100 - 255
Target Start/End: Original strand, 9265628 - 9265784
Alignment:
| Q |
100 |
atatagattaaaccttcaacatttcaatactttacatacaagg--tatcctatacaattcctaaag-aagtttaaaatgaaaagtccacgcaataaaaat |
196 |
Q |
| |
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|||||| |||||| |||||||||||||||| || ||||| || ||||||||| ||||||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
9265628 |
atatagtttaaactttcaacatttcaatac-ttgtatacatggtatatcctatagaattcctaaagaaagtttaaaatgaaaagcccacacaataaaaaa |
9265726 |
T |
|
| Q |
197 |
caaacaagttgatgacaccatgaaaggtaaacataacacttttaaatccaaataatctt |
255 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
9265727 |
caaacaag-tgatgacaccatgaagggtaaacataacacttttaaatccaaataatctt |
9265784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 8 - 255
Target Start/End: Complemental strand, 7710744 - 7710500
Alignment:
| Q |
8 |
aagcataggtaaggatacaattatgaatccataattagatatcaaatagaaccaatgtaaacaagcaagaaggagaacaaactcacaaacacatatagat |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||| ||| |||| |||| | ||||||||||||||||| |||| ||||||| |
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| T |
7710744 |
aagcataggtaagtatacaattatgaatccataattagatatcagatagaatcaacgtaatcaaggacaaaggagaacaaactcacgaaca--tatagat |
7710647 |
T |
|
| Q |
108 |
taaaccttcaacatttcaatactttacatacaaggtatcctatacaattcctaaagaagtttaaaatgaaaagtccacgcaataaaaatcaaacaagttg |
207 |
Q |
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|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
7710646 |
taaaccttcaacatttcaatacttg-catacaaggtatcctatacaattcctaaaaaagtttaaaatgaaaaggccacgcaataaaaatctgacaagttg |
7710548 |
T |
|
| Q |
208 |
atgacaccatgaaaggtaaacataacacttttaaatccaaataatctt |
255 |
Q |
| |
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||||||||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
7710547 |
atgacaccatgaaaggtaatcataacacttttaactccaaataatctt |
7710500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 100 - 255
Target Start/End: Complemental strand, 22918506 - 22918352
Alignment:
| Q |
100 |
atatagattaaaccttcaacatttcaatactttacatacaaggtatcctatacaattcctaaagaagtttaaaatgaaaagtccacgcaataaaaatcaa |
199 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||| | | |||||||||| ||| |
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| T |
22918506 |
atatagcttaaaccttcaacatttcaatacttg-catacatggtatcctatagaattcctaaagaagtttaaaatgaaaatcctaggcaataaaaaacaa |
22918408 |
T |
|
| Q |
200 |
acaagttgatgacaccatgaaaggtaaacataacacttttaaatccaaataatctt |
255 |
Q |
| |
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|||||||||||| | |||||| |||| ||||||||||||||||||||||||||||| |
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|
| T |
22918407 |
acaagttgatgataacatgaagggtagacataacacttttaaatccaaataatctt |
22918352 |
T |
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