View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302_low_3 (Length: 478)
Name: NF4302_low_3
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 20 - 469
Target Start/End: Complemental strand, 2796127 - 2795678
Alignment:
| Q |
20 |
actcactttagaggaatcaaatatgtctaaacatttgttcagtttttgtgtcgacatactctttcctactatcagaaaagaaaatatattgaatgactcg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2796127 |
actcactttagaggaatcaaatatgtctaaacatttgttcagtttttgtgtcgacatactctttcctattatcagaaaagaaaatatattgaatgactcc |
2796028 |
T |
|
| Q |
120 |
ttgcaaaattgtttataaaattgttacaagtgaaaatggacataatgtagaaagacttgatggcaaaaaagagattgatttcacttagaaactatagcag |
219 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2796027 |
ttgcggaattgtttataaaattgttataagtgaaaatggacataatgtagaaagacttgatggcaaaaaagagattgatttcacttagaaactatagcag |
2795928 |
T |
|
| Q |
220 |
agaaacaaatattaaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaaccttcggattgatggagctcgtgccattggg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2795927 |
agaaacaaatattaaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaaccttcggattgatggagctcgtgccattggg |
2795828 |
T |
|
| Q |
320 |
gaagcggttgttacaggtattctgcagaataaaatttataacatcaaaattccgatttgcagaagttttatccatattagaaccatattttttaaaattt |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2795827 |
gaagcggttgttacaggtattctgcagaataaaatttataacatcaaaattccgatttgcagaagttttatccatattagaaccatatttttttaaattt |
2795728 |
T |
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| Q |
420 |
tgtattctgatattctccgttacctcttatgaacgtcaacaaattcatct |
469 |
Q |
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| T |
2795727 |
tgtattctgatattctccgttacctcttatgaacgtcaacaaattcatct |
2795678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 191 - 324
Target Start/End: Complemental strand, 48671084 - 48670950
Alignment:
| Q |
191 |
agattgatttcacttagaaactatagcagagaaacaaatatt-aaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaac |
289 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||| | | |||| |||| ||||||| |||| ||||| || | ||| | |
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| T |
48671084 |
agattgatttcacttggaaactatagcagagaaacaaatattaaaatcataaaagatgcgtaacgttaaaccacttaccgctcccttttggccagtcatc |
48670985 |
T |
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| Q |
290 |
cttcggattgatggagctcgtgccattggggaagc |
324 |
Q |
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||||||| |||||||||||||||||||| |||||| |
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| T |
48670984 |
cttcggactgatggagctcgtgccattgaggaagc |
48670950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 324
Target Start/End: Complemental strand, 16391722 - 16391689
Alignment:
| Q |
291 |
ttcggattgatggagctcgtgccattggggaagc |
324 |
Q |
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| T |
16391722 |
ttcggattgatggagctcgtgccattgaggaagc |
16391689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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