View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302_low_4 (Length: 469)
Name: NF4302_low_4
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 125 - 464
Target Start/End: Original strand, 47927862 - 47928201
Alignment:
| Q |
125 |
tatgatgaaatgaatgatttgataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacattatatattatatagttaatc |
224 |
Q |
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| T |
47927862 |
tatgatgaattgaatgatttgataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacattatatattatatagttaatc |
47927961 |
T |
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| Q |
225 |
aatatctgatttcaagcacataaaggagggtttcttccagctccaccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaac |
324 |
Q |
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| T |
47927962 |
aatatctgatttcaagcacataaaggagggtttcttccagctcctccaaagtagaatacaggatcttttccatatggagcgtcattgagggcactgtaac |
47928061 |
T |
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| Q |
325 |
aatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaa |
424 |
Q |
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| T |
47928062 |
aatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaa |
47928161 |
T |
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| Q |
425 |
tcgaccacttgctgcctctccactacccatctgtgctcct |
464 |
Q |
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| T |
47928162 |
tcgaccacttgctgcatctccactacccatctgtgttcct |
47928201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 260 - 425
Target Start/End: Original strand, 47918235 - 47918400
Alignment:
| Q |
260 |
tccagctccaccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgat |
359 |
Q |
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| T |
47918235 |
tccagcacctccaaaatagaatacaggatcttttccatatggagcatcattgaaggcactgtaacaatatggttctatagcatgtgtacttacaaatgat |
47918334 |
T |
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| Q |
360 |
ggatacttaagagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaat |
425 |
Q |
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| T |
47918335 |
gggtacttaagtgcttgcgaattatctttgattctcacaccacccatgtaacatgcaaccccaaat |
47918400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 270 - 464
Target Start/End: Original strand, 47935441 - 47935635
Alignment:
| Q |
270 |
ccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaa |
369 |
Q |
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| T |
47935441 |
ccaaaataaaatacaggatcttgtccatatggagcttcattgagggcactgtaacaatatggttctgcagcataagtagttacatatgctggatatttga |
47935540 |
T |
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| Q |
370 |
gagcttgtgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatctgtgctcct |
464 |
Q |
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| T |
47935541 |
gagcttttgaataatccttaattctaacattgcttatgtaacatgcgaacccaaatcgaccacttgcttcttctccactacccatctgtgttcct |
47935635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 277 - 464
Target Start/End: Original strand, 47946590 - 47946777
Alignment:
| Q |
277 |
agaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaagagcttg |
376 |
Q |
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|||| |||||||||||||||||| || |||| ||||||||||||||||| || |||||||| |||| ||||||||||||| ||||||||| |||| || |
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| T |
47946590 |
agaagacaggatcttttccatattgaacatcgttgagggcactgtaacagtaaggttctgctgcatatgtacttacaaattgtggatacttgagagtttc |
47946689 |
T |
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| Q |
377 |
tgaataatctttaattctcacactacccatgtaacatgcggccccaaatcgaccacttgctgcctctccactacccatctgtgctcct |
464 |
Q |
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| T |
47946690 |
tgaataatccttaattctcacatttgtcatgtaacatgcgaacccaaatcgaccacttgctgcttctccactacccatttgtgttcct |
47946777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 37432026 - 37431956
Alignment:
| Q |
134 |
atgaatgatttgataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacat |
204 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37432026 |
atgaatgattagataagaaacaacaagaaagtaaacttgcaagaaacatatttattgttcatcaaacacat |
37431956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 270 - 397
Target Start/End: Original strand, 47909079 - 47909206
Alignment:
| Q |
270 |
ccaaagtagaatacaggatcttttccatatggagcatcattgagggcactgtaacaatatggttctgcagcatgtgtacttacaaatgatggatacttaa |
369 |
Q |
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|||||| |||| ||||| |||||||||||||||||| ||| |||||||||||||| | || ||| |||||||||| |||| ||| ||| ||||||| |
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| T |
47909079 |
ccaaagaagaacacagggtcttttccatatggagcaatatttagggcactgtaacactcaggctctccagcatgtgtggttacgaattgtgggtacttaa |
47909178 |
T |
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| Q |
370 |
gagcttgtgaataatctttaattctcac |
397 |
Q |
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| T |
47909179 |
gagcttgtgagtaatctttaattctcac |
47909206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 47927755 - 47927800
Alignment:
| Q |
18 |
catttaactattaacaatacactctcgcagcttataagatatgtgc |
63 |
Q |
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| T |
47927755 |
catttaactattgacaatacagtctcgcagcttataagatatgtgc |
47927800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 37432139 - 37432100
Alignment:
| Q |
20 |
tttaactattaacaatacactctcgcagcttataagatat |
59 |
Q |
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| T |
37432139 |
tttaactattaacaatacacactcgcatcttataagatat |
37432100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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