View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302_low_7 (Length: 366)
Name: NF4302_low_7
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 30369089 - 30368757
Alignment:
| Q |
11 |
acatcatcacatactattagtcctttggggcgaatcaaggagggttcggcacacacatctcttctttgttggtcaaatttgaattcacagtttataatct |
110 |
Q |
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| T |
30369089 |
acatcaacacatactattagtcctttggggcgaatcaaggatggttcggcacacacatctcttctttgttggtcaaatttgaattcacagtttataatct |
30368990 |
T |
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| Q |
111 |
cattccaacatattttcatatttgaatttcaaattgaaatgcaaatacaatcagggatggattttaccagttcggcatccgggtcaattttaaaacattg |
210 |
Q |
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| T |
30368989 |
cattccaacatattt--------gaatttcaaattgaaatgcaaatacaatcagggatggattttgccagttcggcatccgggtcaattttaaaacattg |
30368898 |
T |
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| Q |
211 |
gtgcaaacaataatttaaaagagatcaacattgattgatttgaattcctttgtttcattgcagaaacaatcagaaatatcataacnnnnnnnnnaccaaa |
310 |
Q |
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| T |
30368897 |
gtgcaaacaataatttaaaagagatcaacattgattgatttgaattcctttgtttcattgcagaaacaatcagaaatatcataactttttttttagcaaa |
30368798 |
T |
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| Q |
311 |
gaaatatcataac---tatgccaagaggattaacagttgct |
348 |
Q |
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| T |
30368797 |
gaaatatcataacttatatgcaaagaggattaacagttgct |
30368757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Complemental strand, 31406220 - 31406171
Alignment:
| Q |
97 |
acagtttataatctcattccaacatattttcatatttgaatttcaaattg |
146 |
Q |
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| T |
31406220 |
acagcttataatcacattccaacatactttcatatttgaatttcaaattg |
31406171 |
T |
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