View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4302_low_9 (Length: 311)
Name: NF4302_low_9
Description: NF4302
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4302_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 3 - 295
Target Start/End: Original strand, 17353863 - 17354151
Alignment:
| Q |
3 |
gtcagatttaatcaatgattgagattcattaaaaacaaaagcaagaacatttacatgttatcacacacaannnnnnnctcgtttcatcatcaccaaaaac |
102 |
Q |
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| T |
17353863 |
gtcagatttaatcaatgattgagattcattaaaaacaaaagcaa---catttacatgttatcacacacaatttttttctcctatcatcatcaccaaaaac |
17353959 |
T |
|
| Q |
103 |
acacaagtgcaatttatgcatagaaacatcaagatcatcaatttgtctaacatttatcatcatctatagcagtttaagatatttttagatataaacttca |
202 |
Q |
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|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |||| |
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| T |
17353960 |
acacaagtgcaatttatgcatataaacatcaagattatcaatttgtctaacatttatcatcatctataggagtttaagagatttttagatatacatttca |
17354059 |
T |
|
| Q |
203 |
caaaatgtcaaacttcgcaaatttttagatccatatatgtaaccatcaaacattgnnnnnnnatgttgatccaatattataaagtatgtttat |
295 |
Q |
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| T |
17354060 |
caaaatttcaaacttcataaatttttagatccatatatgtaaccatcaaacattg-ttttttatgttgatccaatattataaagtatgtttat |
17354151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 55510633 - 55510541
Alignment:
| Q |
85 |
ttcatcatcaccaaaaacacacaagtgcaatttatgcata-gaaacatcaagatcatcaatttgtctaacatttatcatcatctatagcagtt |
176 |
Q |
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|||||||||||||||| ||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||| |||| |||| |||| |||| |
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| T |
55510633 |
ttcatcatcaccaaaaccacacaaatgcaaattatacatccgaaacatcaagatcatcaatttgtctaacattcatcaacatccataggagtt |
55510541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Complemental strand, 55510658 - 55510629
Alignment:
| Q |
2 |
tgtcagatttaatcaatgattgagattcat |
31 |
Q |
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| T |
55510658 |
tgtcagatttaatcaatgattgagattcat |
55510629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 16718352 - 16718298
Alignment:
| Q |
15 |
caatgattgagattcattaaaaacaaaagcaagaacatttacatgttatcacaca |
69 |
Q |
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||||||||||||||||||||||||||||| ||||| |||||||| |||||||||| |
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| T |
16718352 |
caatgattgagattcattaaaaacaaaagtaagaaaatttacatattatcacaca |
16718298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 14302117 - 14302049
Alignment:
| Q |
88 |
atcatcaccaaaaacacacaagtgcaatttatgcatag-aaacatcaagatcatcaatttgtctaacat |
155 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| | | ||||||||||| |||||||||||||||||| |
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| T |
14302117 |
atcatcaccaagaacacacaagtgcaaattatgcgttggaaacatcaagaccatcaatttgtctaacat |
14302049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 14302197 - 14302143
Alignment:
| Q |
3 |
gtcagatttaatcaatgattgagattcattaaaaacaaaagcaagaacatttaca |
57 |
Q |
| |
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|||| ||||||||||||||| ||||||||| |||||||||| ||||||| ||||| |
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|
| T |
14302197 |
gtcaaatttaatcaatgattcagattcattcaaaacaaaagtaagaacagttaca |
14302143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 69
Target Start/End: Complemental strand, 16732205 - 16732151
Alignment:
| Q |
15 |
caatgattgagattcattaaaaacaaaagcaagaacatttacatgttatcacaca |
69 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||| || ||||||| |
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| T |
16732205 |
caatgattgagattcattaaaaacaaaaataagaaaatttacatattgtcacaca |
16732151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 44409496 - 44409560
Alignment:
| Q |
8 |
atttaatcaatgattgagattcattaaaaacaaaagcaagaacatttacatgttatcacacacaa |
72 |
Q |
| |
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||||||| |||||| |||||||||||||| |||||| || ||||||||||| | ||||||||||| |
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| T |
44409496 |
atttaattaatgatcgagattcattaaaatcaaaagtaaaaacatttacatatcatcacacacaa |
44409560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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