View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4303_high_4 (Length: 458)
Name: NF4303_high_4
Description: NF4303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4303_high_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 442
Target Start/End: Complemental strand, 45131037 - 45130606
Alignment:
| Q |
9 |
cacagaccataactccaacatctttgtctttacactcaaacagaatttctgcaaaattaacaaattttatatatcactgtcctgttcatacaatcaacat |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||| |
|
|
| T |
45131037 |
cacaaaccataactccaacatctttgtctttacactcaaacagaatttctgcaaaattaacaaattttatatatcattgtcccgttgatacaatcgacat |
45130938 |
T |
|
| Q |
109 |
ggtaaaagatattagtctctgcagctgcgtatggaggatacccaatttacacacaacaatnnnnnnnnnnctcaataatatatataaaattaccccgcct |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45130937 |
ggtaaaagatattagtctctgcagctgcgtatggaggatacccaatttacacacaacaataaaaaaaa--ctcaataatatatataaaattaccccgcct |
45130840 |
T |
|
| Q |
209 |
cacttacttttgagatcaggtcttgcaccaaaatgtacattggtagcttgcaccaaagattgatgaggaaggctttcaagctctctttctgaaccataaa |
308 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45130839 |
cacttactcttgagatcaggtcttgcaccaaaatgtacattggtagcttgcagcaaagattgatgaggaaggctttcaagctctctttctgaaccataaa |
45130740 |
T |
|
| Q |
309 |
tccatgaccctggtgatcttgttggtgttggaacttctacattcattatttgcttattttctatagtgttctgtctcttacaccaaagaaatacaacact |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45130739 |
tccatgaccctggtgatcttgttggtgttggaacttctacattcattatttgcttattttctatagtgttctgtctcttacaccaaagaaatacaacact |
45130640 |
T |
|
| Q |
409 |
agaacatatacatacacacgcacatagtagaaac |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
45130639 |
agaacatatacatacacacgcacatagtagaaac |
45130606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 194 - 422
Target Start/End: Complemental strand, 45113950 - 45113722
Alignment:
| Q |
194 |
aaaattaccccgcctcacttacttttgagatcaggtcttgcaccaaaatgtacattggtagcttgcaccaaagattgatgaggaaggctttcaagctctc |
293 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
45113950 |
aaaattaccctgcctcacttactcttgagatcaggtcttgagccaaaatgtacattggtagcttgcactaaagattgatgaggaaggctctcaagctctc |
45113851 |
T |
|
| Q |
294 |
tttctgaaccataaatccatgaccctggtgatcttgttggtgttggaacttctacattcattatttgcttattttctatagtgttctgtctcttacacca |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||| |||| |||||| |||| |
|
|
| T |
45113850 |
tttctgaaccataaatccatgaccctggtgatcttgctggtgttgaaacttctacattcattatatgcttattttctaatttgtttaatctcttcaacca |
45113751 |
T |
|
| Q |
394 |
aagaaatacaacactagaacatatacata |
422 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
45113750 |
aagaaaaacaacactagaacatatacata |
45113722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 45114129 - 45114071
Alignment:
| Q |
16 |
cataactccaacatctttgtctttacactcaaacagaatttctgcaaaattaacaaatt |
74 |
Q |
| |
|
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45114129 |
cataactccaacatctttgccttcacactcaaacagaatttctgcaaaattaacaaatt |
45114071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 11593427 - 11593380
Alignment:
| Q |
210 |
acttacttttgagatcaggtcttgcaccaaaatgtacattggtagctt |
257 |
Q |
| |
|
|||||||||| |||||||||||| ||||| |||| ||||||||||||| |
|
|
| T |
11593427 |
acttacttttaagatcaggtctttcaccataatgcacattggtagctt |
11593380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University