View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4303_high_5 (Length: 431)
Name: NF4303_high_5
Description: NF4303
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4303_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 20 - 424
Target Start/End: Original strand, 27065428 - 27065832
Alignment:
| Q |
20 |
gtatctaagtggcaaatagcaacaccatgattaatctttgccttagaaactggatccaatagatccgcttcatagacatgaacatttggaaccgagtgac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27065428 |
gtatctaagtggcaaatagcaacaccatgattaatctttgccttagaaactggatccaatagatccgcttcatagacatgaacatttggaaccgagtgac |
27065527 |
T |
|
| Q |
120 |
agtagtataacaaataaggaaacaaactctggtggcacgacacagattcagtaacttttccaccatttatccccttaactttacccaccatgacatcctt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27065528 |
agtagtataacaaataaggaaacaaactctggtgacacgatacagattcagtaacttttccaccatttatccccttaactttacccaccatgacatcctt |
27065627 |
T |
|
| Q |
220 |
gcccgccccatttacattctcagtggatcgaacagtaacactgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgc |
319 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27065628 |
gcccgccccatttacattctcagtggaccgaacagtaacactgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgc |
27065727 |
T |
|
| Q |
320 |
ttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccaccatcattttgttcatcgaagaattctcggacaccttaaaaacctgcttca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||| |
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|
| T |
27065728 |
ttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccaccatcatcttattcatcgaagaattctcggacaccttgaaaacttgcttca |
27065827 |
T |
|
| Q |
420 |
tctca |
424 |
Q |
| |
|
||||| |
|
|
| T |
27065828 |
tctca |
27065832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 20 - 424
Target Start/End: Original strand, 27079145 - 27079549
Alignment:
| Q |
20 |
gtatctaagtggcaaatagcaacaccatgattaatctttgccttagaaactggatccaatagatccgcttcatagacatgaacatttggaaccgagtgac |
119 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||| | ||||| || ||||| |||||||| ||| |||| |||||||||||||| | |
|
|
| T |
27079145 |
gtatctaagtgacaaatagcaacaccatgatttatcttcaccttagactcaggatctaaaagatctgcttcataaacacgaacctttggaaccgagtggc |
27079244 |
T |
|
| Q |
120 |
agtagtataacaaataaggaaacaaactctggtggcacgacacagattcagtaacttttccaccatttatccccttaactttacccaccatgacatcctt |
219 |
Q |
| |
|
| ||||||| |||||||||||||||||| ||||| || |||||||||||||||||||| || ||||| ||||| ||||| | || |||||||||| || |
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|
| T |
27079245 |
aatagtatagcaaataaggaaacaaactttggtgacatgacacagattcagtaactttacccccattgatccctttaacccttccaaccatgacattttt |
27079344 |
T |
|
| Q |
220 |
gcccgccccatttacattctcagtggatcgaacagtaacactgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgc |
319 |
Q |
| |
|
||||| ||||||||| ||||||| ||||||||||| ||| || |||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||| |
|
|
| T |
27079345 |
gcccgatccatttacactctcagttgatcgaacagttacatcatggcccaaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgc |
27079444 |
T |
|
| Q |
320 |
ttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccaccatcattttgttcatcgaagaattctcggacaccttaaaaacctgcttca |
419 |
Q |
| |
|
|| || ||||| | |||||| |||||||| ||||||| ||| | ||||| ||||| || | |||||| |||||||| |||||||||||||| ||||||| |
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|
| T |
27079445 |
tttgtctcacccatactcggtgccctctcacactcacccaatgagtccactatcatcttatccatcgaggaattctcagacaccttaaaaacttgcttca |
27079544 |
T |
|
| Q |
420 |
tctca |
424 |
Q |
| |
|
|||| |
|
|
| T |
27079545 |
actca |
27079549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 27052986 - 27053386
Alignment:
| Q |
20 |
gtatctaagtggcaaatagcaacaccatgattaatctttgccttagaaactggatccaatagatccgcttcatagacatgaacatttggaaccgagtgac |
119 |
Q |
| |
|
||||| ||||| || || |||||||||||||| ||||| ||||||| || ||||| |||| ||||||||| | ||| |||||| ||||| |||| |
|
|
| T |
27052986 |
gtatccaagtgacagatcgcaacaccatgatttatcttcaccttagacttagggtccaaaagattcgcttcataaattcgaatatttggcaccgaatgac |
27053085 |
T |
|
| Q |
120 |
agtagtataacaaataaggaaacaaactctggtggcacgacacagattcagtaacttttccaccatttatccccttaactttacccaccatgacatcctt |
219 |
Q |
| |
|
|||| |||| ||| |||||||||||||| || || || ||||| || || |||| || |||||||||||| |||| |||| ||| ||||| |||| || |
|
|
| T |
27053086 |
agtaatatagcaagtaaggaaacaaactttgatgacaagacactgactccataacgttcccaccatttatctcctttacttgacctaccataacattgtt |
27053185 |
T |
|
| Q |
220 |
gcccgccccatttacattctcagtggatcgaacagtaacactgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgc |
319 |
Q |
| |
|
| || ||||||||||||||||||||| ||||| || ||| || |||||||| |||||||||||| |||||||| |||||||| ||||| ||||||||| |
|
|
| T |
27053186 |
gttcgacccatttacattctcagtggaccgaaccgtcacattgctacccaaaatagaagttgcaaagtcaatcatgtcctcaagcgaacctacacaacgc |
27053285 |
T |
|
| Q |
320 |
ttcgtttcacctacactcggcgccctctcgcactcactcaacgcatccaccatcattttgttcatcgaagaattctcggacaccttaaaaacctgcttca |
419 |
Q |
| |
|
|| | |||||| ||| ||||| || || ||||||||||| | ||||| ||||| || | ||| | ||||| || |||||||| ||||| ||||||| |
|
|
| T |
27053286 |
ttgatctcacctttacttggcgctctttcacactcactcaatgagtccactatcatcttttccataaaggaattttcagacaccttgaaaacttgcttca |
27053385 |
T |
|
| Q |
420 |
t |
420 |
Q |
| |
|
| |
|
|
| T |
27053386 |
t |
27053386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 107 - 315
Target Start/End: Complemental strand, 14866523 - 14866315
Alignment:
| Q |
107 |
ggaaccgagtgacagtagtataacaaataaggaaacaaactctggtggcacgacacagattcagtaacttttccaccatttatccccttaactttaccca |
206 |
Q |
| |
|
|||||||||||||| || || | |||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| ||||| ||||| ||||| |
|
|
| T |
14866523 |
ggaaccgagtgacaataataaagcaaatacggaaacaaactctgatgacacgaaacagaccgggtcactttcccgccattaatcccattaacccgaccca |
14866424 |
T |
|
| Q |
207 |
ccatgacatccttgcccgccccatttacattctcagtggatcgaacagtaacactgtgacccaaaacagaagttgcaaaatcaatcatatcctcaagaga |
306 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||| | ||||| ||| | |||||||||| ||||||||||| || ||||||||||||| ||| |
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|
| T |
14866423 |
ccataacatccttcttcgacccatttacattctcagtagtccgaaccaccacatttcgacccaaaaccgaagttgcaaagtcgatcatatcctcaataga |
14866324 |
T |
|
| Q |
307 |
acccacaca |
315 |
Q |
| |
|
|| ||||| |
|
|
| T |
14866323 |
cccaacaca |
14866315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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